PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028067996.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1039aa MW: 114909 Da PI: 6.8781

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028067996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.9e-40	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_028067996.1 154 VCQVDDCRSDLTNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 231 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence
MEARFGRKAH HFYGPVMSDL KAVGKKSMEW DLNDWKWDGD LFTATPLNSV PSDCRSKQLF 60 PDGSEIPTNT GLSNSSSSCS DEINLGNDKG KRELEKRRRV AVVEDEELND GGGSLNLKLG 120 GQVYSITEAE MEKWEGKSGK KSKVAAAATS NRAVCQVDDC RSDLTNAKDY HRRHKVCDMH 180 SKASKALVGN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTH PENVVNGGSL 240 NDEHGSSYLL VSLLRILANT HTNSTDQTKD QDLLSHLLRN LANLAGSING NNISGLLPGS 300 QNLQNAGTSL GTPEKVSNLI SNSPKHPSIF GSTSNTDDFI DIQDPPKLNG QCTTVSVLEG 360 IEKRTFSDDP LGGTLQTPST ILCPTRDSIP AIASGPETAA GRMKLNDIDL NNVYDDSQDC 420 AENLDSYHAP VNPGTGSLDC TVWGHQHCQK SSPPQTSGNS GSMSTLSPSS SSGETQSRTD 480 RIVFKLFGKD PSDFPLVLRK QILDWLSHSP TDIESYIRPG CIILTIYLRL GKSTWDELCC 540 DLNSSLTSLL DASNDSFWRT GWVYARVQHR VAFTYNGQVV LDTLLPRKSH KNCRISSIKP 600 IAVSISERAQ FLVEGFNLYQ STTRLLCALE GKYLVQESCS DMMEGGNTSI DHDEIQCLSF 660 SCSIPNVTGR GFIEVEDHGL SSSFFPFIVA EHDVCSEICM LESEIGVAEI ADDIQAESEQ 720 MNARNNALDF IHEMGWLLHR CQLQFRLGSA DPNLDLFPFK RFRWLMEFSL EHNWCAVVKK 780 LLGISFNGTV DAGDHSSIEL ALLEMALLHR AVHKNCRSMV EMLLRYVPDG VLDKPDSEQK 840 QHVYSSSNFL FKPDAIGPGG LTPLHIAASR DGSENVLDAL TDDPGLVGIN AWKGTHDSTG 900 LTPNDYACLR GYYSYINLVQ KKINKKKSGN EHVVLDIPGA LLAHNIKQKL MNGHRSAKVA 960 SLHTENGEMK PIQRHCKLCE QKMAYRNPRA SLAIYKPAML SMVAIAAVCV CVALLFKSSP 1020 EVHCVFQPFR WELLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence

MEARFGRKAH HFYGPVMSDL KAVGKKSMEW DLNDWKWDGD LFTATPLNSV PSDCRSKQLF  60
PDGSEIPTNT GLSNSSSSCS DEINLGNDKG KRELEKRRRV AVVEDEELND GGGSLNLKLG  120
GQVYSITEAE MEKWEGKSGK KSKVAAAATS NRAVCQVDDC RSDLTNAKDY HRRHKVCDMH  180
SKASKALVGN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTH PENVVNGGSL  240
NDEHGSSYLL VSLLRILANT HTNSTDQTKD QDLLSHLLRN LANLAGSING NNISGLLPGS  300
QNLQNAGTSL GTPEKVSNLI SNSPKHPSIF GSTSNTDDFI DIQDPPKLNG QCTTVSVLEG  360
IEKRTFSDDP LGGTLQTPST ILCPTRDSIP AIASGPETAA GRMKLNDIDL NNVYDDSQDC  420
AENLDSYHAP VNPGTGSLDC TVWGHQHCQK SSPPQTSGNS GSMSTLSPSS SSGETQSRTD  480
RIVFKLFGKD PSDFPLVLRK QILDWLSHSP TDIESYIRPG CIILTIYLRL GKSTWDELCC  540
DLNSSLTSLL DASNDSFWRT GWVYARVQHR VAFTYNGQVV LDTLLPRKSH KNCRISSIKP  600
IAVSISERAQ FLVEGFNLYQ STTRLLCALE GKYLVQESCS DMMEGGNTSI DHDEIQCLSF  660
SCSIPNVTGR GFIEVEDHGL SSSFFPFIVA EHDVCSEICM LESEIGVAEI ADDIQAESEQ  720
MNARNNALDF IHEMGWLLHR CQLQFRLGSA DPNLDLFPFK RFRWLMEFSL EHNWCAVVKK  780
LLGISFNGTV DAGDHSSIEL ALLEMALLHR AVHKNCRSMV EMLLRYVPDG VLDKPDSEQK  840
QHVYSSSNFL FKPDAIGPGG LTPLHIAASR DGSENVLDAL TDDPGLVGIN AWKGTHDSTG  900
LTPNDYACLR GYYSYINLVQ KKINKKKSGN EHVVLDIPGA LLAHNIKQKL MNGHRSAKVA  960
SLHTENGEMK PIQRHCKLCE QKMAYRNPRA SLAIYKPAML SMVAIAAVCV CVALLFKSSP  1020
EVHCVFQPFR WELLKYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV
2	224	230	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein