PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028065838.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 558aa MW: 60091.7 Da PI: 8.3444

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028065838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	210	254	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_028065838.1 210 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 254 79****************************************985 PP
2	QLQ	62.9	8.4e-22	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k XP_028065838.1 144 GPFTPSQWMELEHQALIYKYITANMPIPHNLLIPIRK 180 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MDLGMVGFDG LVGSDSCFGS SLSSDPDSTK QKWYGSGRFL GQERSAPASE DEWRTLKVAK 60 TDDFSASKAI LSQQRGSLLR ANSSSLLSDG QHMLSFSSPN SQSVTLPHYH QSSSSNSRNT 120 GYGSGGGGCL NLASMHGVLM GVRGPFTPSQ WMELEHQALI YKYITANMPI PHNLLIPIRK 180 ALDSAGFSSF TRPSTLGWGA FHLGFSNNTD PEPGRCRRTD GKKWRCSRDA VADQKYCERH 240 MNRGRHRSRK PVEGQSGHSV SGPTTTTTVK LASSTSAALV VPGDGTTNSL GLSHHPQLKN 300 LQPGAPNSCA STPHINRFFL NNENVGETIQ GATDLSMLSP TISLTPNQFS VPKQQNPYEQ 360 SSRSEFGSVC SDSLLNPLHK SSTLNNCRNY SSPRNLNDGE SESQHSVHQF MDDWHKTQLS 420 ISIPVDASDF MSSTSSPANE KLALSPLRLS RELDSTQMGL GLGNVTNEPN QRQANWIPIS 480 WETSMGGPLG EVLHSTSGSI GDCNRSSALN LMTKGWDKSP RLASSPTGVL QKMTFGSLSN 540 SSAGSSPRAE NLGGLVHI

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MDLGMVGFDG LVGSDSCFGS SLSSDPDSTK QKWYGSGRFL GQERSAPASE DEWRTLKVAK  60
TDDFSASKAI LSQQRGSLLR ANSSSLLSDG QHMLSFSSPN SQSVTLPHYH QSSSSNSRNT  120
GYGSGGGGCL NLASMHGVLM GVRGPFTPSQ WMELEHQALI YKYITANMPI PHNLLIPIRK  180
ALDSAGFSSF TRPSTLGWGA FHLGFSNNTD PEPGRCRRTD GKKWRCSRDA VADQKYCERH  240
MNRGRHRSRK PVEGQSGHSV SGPTTTTTVK LASSTSAALV VPGDGTTNSL GLSHHPQLKN  300
LQPGAPNSCA STPHINRFFL NNENVGETIQ GATDLSMLSP TISLTPNQFS VPKQQNPYEQ  360
SSRSEFGSVC SDSLLNPLHK SSTLNNCRNY SSPRNLNDGE SESQHSVHQF MDDWHKTQLS  420
ISIPVDASDF MSSTSSPANE KLALSPLRLS RELDSTQMGL GLGNVTNEPN QRQANWIPIS  480
WETSMGGPLG EVLHSTSGSI GDCNRSSALN LMTKGWDKSP RLASSPTGVL QKMTFGSLSN  540
SSAGSSPRAE NLGGLVHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-95	GRF family protein