PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028065769.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 696aa    MW: 75970.1 Da    PI: 5.3146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028065769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.56.4e-1013406944373
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                      + e+Ae +++g+  laq++Larl+++ sp g+p++R+a++ +eAL+  l+      ++  p+ ++s+ n + ++ a+k fse+sP+++f+h+t+
  XP_028065769.1 340 FISEAAELIQTGNSILAQEILARLNHQLSPIGKPFNRAAFFCKEALQFILHT-----SNMNPVPPNSPFNLILKIGAYKSFSEISPFIQFAHFTC 429
                     56799******************************************99998.....4444555566667************************* PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     Nqa+le +eg +r+H+iDfdi++G+QW++L+q+La R++g+psl+iT+++sp+++++ el  t+e+L +fA e+++ fef+++  ++l++ + ++
  XP_028065769.1 430 NQALLEVLEGFDRIHVIDFDIGYGGQWASLMQELALRSNGAPSLKITAFASPSTHDQLELGLTRENLIHFAGEINMAFEFEIVNIDSLSSAS-WS 523
                     **********************************************************************************9888888885.55 PP

            GRAS 194 L..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     L  +v+ +Ea+aVnl +   + +  ++sl+     +L+++k+lsPk+vv v++ +d+++ +F +++++al+  s l++sl+a    + ++ +k+E
  XP_028065769.1 524 LpfHVSDNEAVAVNLPVGSLSNY--QMSLP----LILSFIKQLSPKIVVSVDRGCDRTDLPFPNHVIQALQSLSILLESLDAV-NINPDALQKIE 611
                     5348999*********9666655..45555....5*********************************************665.45779999*** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r++l++ i++ ++ + ++     e+  +Wr  + ++GF+p+++s++a++qa++++++++++g++ve+++ slvl+W+++ Lvs+SaW
  XP_028065769.1 612 RFFLQPGIEKTLMGRYRS----PEKTPHWRTLFLSCGFSPLTFSNFAESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKDLVSASAW 694
                     *************99998....9**************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MPLPFDFEGK GVLEFVTDSL SSSSSSFSSL SPFSNPLLNQ WKSKEGAFLG SEPTSVLDSI  60
GSPSPQTSTS TLSSSLPGGG GGGGVAAVSG NPSQKWPPPQ ETTSSNVGVE SELQPAPPPP  120
QTTTAIAATE AEKCALGMGM EDWESQEQSI FRWIMGDVED PSMGLNKLLQ SAAVSGGAPA  180
SELEFTGGGF GVVDQGFGLD PVGSSLPNPP IFSPLSNNLL PISLSPIAFN NPPQQCQQPL  240
EPTDSKPQIF NPPFLINHHQ SHHTQNPSFF LPEHYLAPPP QAKRHHHSGL EPPKGPFSNH  300
QLQLLPQYVQ QRPTISMKQR IVVGDEMGMN QQQQQTIIDF ISEAAELIQT GNSILAQEIL  360
ARLNHQLSPI GKPFNRAAFF CKEALQFILH TSNMNPVPPN SPFNLILKIG AYKSFSEISP  420
FIQFAHFTCN QALLEVLEGF DRIHVIDFDI GYGGQWASLM QELALRSNGA PSLKITAFAS  480
PSTHDQLELG LTRENLIHFA GEINMAFEFE IVNIDSLSSA SWSLPFHVSD NEAVAVNLPV  540
GSLSNYQMSL PLILSFIKQL SPKIVVSVDR GCDRTDLPFP NHVIQALQSL SILLESLDAV  600
NINPDALQKI ERFFLQPGIE KTLMGRYRSP EKTPHWRTLF LSCGFSPLTF SNFAESQAEC  660
VVKRTPVRGF HVEKRQSSLV LCWQRKDLVS ASAWMC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-142GRAS family protein