PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028064814.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 273aa MW: 29642.8 Da PI: 7.0412

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028064814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.7e-39	39	140	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_028064814.1 39 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 133 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_028064814.1 134 AMVQTQL 140 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MAEPQSDGTS EGRRKSSGKR STTAIDAGVA AAVPLPTAPC GACKFLRRKC ISGCIFAPHF 60 GSDQGAARFA AVHKVFGASN VSKLLLHIPM NRRHDAVVTI SYEAQARLSD PVYGCVSTIL 120 ALQQQVASLQ AELAMVQTQL INSRLAVANA FHNTHQLQPH QQQQQQHIAL LQPGPGPAYS 180 NNSSSTSNNH HHHHHHHLLN NNNNLIINSS FDALTCETTA PSSHSFEPLQ LSSQCPPRPP 240 SSQEDEDQDQ EEDEEDSRNN PAVSFAHHIL RSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-60	LBD family protein