PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028063817.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 123aa    MW: 13608.7 Da    PI: 9.0559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028063817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.76.4e-46141131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
  XP_028063817.1  14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLA 108
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_028063817.1 109 LAQAE 113
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MKENGGRKQG AASPCAACKL LRRRCAQDCV FAPYFPADEP QKFASVHKVF GASNVNKMLQ  60
ELPMHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DLLQTQLALA QAEVVHMRMR  120
HFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-64LBD family protein