PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062744.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 262aa MW: 29294.1 Da PI: 6.0216

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.7	1.9e-54	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+++eenkrrtl+k+diaaa++rtd+fdfl XP_028062744.1 81 QLQVFWTNQmqeIERTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWINTEENKRRTLQKNDIAAAISRTDVFDFL 175 89****9777899**************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_028062744.1 176 VDIIPRDELK 185 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MDQPEQTQHQ LPVVGVVAGS GQMAYASLPY HTAPVVVSGS STVALHSSTE PPATFSTSQH 60 QLAYQQAQNV HHQQQQQQQQ QLQVFWTNQM QEIERTADFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWINTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEEGLG VTKASIPMVG SPADSIPYYY VPPQHPVGPT GIIMGKPVDQ AALYAGQQPQ 240 PPMAFMPWPQ THQQQTQQQQ SE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	8e-79	NF-YC family protein