PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062653.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 514aa MW: 56086.3 Da PI: 7.5534

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_028062653.1 78 YICEVCHKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	13	0.00031	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_028062653.1 154 WKCDKCSKRYAVQSDWKAHTKIC 176 58*****************9987 PP
3	zf-C2H2	10.9	0.0014	184	202	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_028062653.1 184 DCGTIFSRKDSFVTHRAFC 202 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MSNFVQEFDD DEEDDQQFQS TLVTQSSNGS PNPTENGCDG STPATTTSKK KRNLPGNPDP 60 DAEVVALSPR TLMATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRP TTQVKKRVYI 120 CPEPNCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHTKICGTRE 180 YRCDCGTIFS RKDSFVTHRA FCDALTEENY KMNQNLAAAT GGMLQNQAQE LFSSSLMPAS 240 DSCTNTNTNT NTNTNTNSHN RMMNLSVSHH EMIDNPLISL NSHGAMISNN LDMLNPRMTT 300 RACFSSIDNS SSQMPMIGSV YTSATALLQK AAEMGAKISD NSITPILLRG FTGYSTSTNT 360 SGGIGSAQVQ EASSSIAANG LYVAANSETL FDKNMDAGGD ARPDGYINVD VSHQTTTAGL 420 YDSSSSSHFM QSGNGNGNVG NLLERQVFLQ GGGHEKMTLD FLGVEPAGAT AAAHSISFGK 480 KRSYEGNMVG LGGYSNAQQS PHNLHSDWLY KVGA

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MSNFVQEFDD DEEDDQQFQS TLVTQSSNGS PNPTENGCDG STPATTTSKK KRNLPGNPDP  60
DAEVVALSPR TLMATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRP TTQVKKRVYI  120
CPEPNCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHTKICGTRE  180
YRCDCGTIFS RKDSFVTHRA FCDALTEENY KMNQNLAAAT GGMLQNQAQE LFSSSLMPAS  240
DSCTNTNTNT NTNTNTNSHN RMMNLSVSHH EMIDNPLISL NSHGAMISNN LDMLNPRMTT  300
RACFSSIDNS SSQMPMIGSV YTSATALLQK AAEMGAKISD NSITPILLRG FTGYSTSTNT  360
SGGIGSAQVQ EASSSIAANG LYVAANSETL FDKNMDAGGD ARPDGYINVD VSHQTTTAGL  420
YDSSSSSHFM QSGNGNGNVG NLLERQVFLQ GGGHEKMTLD FLGVEPAGAT AAAHSISFGK  480
KRSYEGNMVG LGGYSNAQQS PHNLHSDWLY KVGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	C2H2 family protein