PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028062485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LSD | ||||||||
Protein Properties | Length: 139aa MW: 14618.9 Da PI: 8.4965 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.2 | 5.7e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+++ XP_028062485.1 7 CSGCRSILLYPRGASNVCCALCNAI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 49 | 9.9e-16 | 47 | 70 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ XP_028062485.1 47 CGNCRTTLMYPYGAPSVKCAICHY 70 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence |
MQSQIVCSGC RSILLYPRGA SNVCCALCNA ITSVPPPASN QLAHVNCGNC RTTLMYPYGA 60 PSVKCAICHY ITNVNMGNVR VPIPMHRPNG ATTPASMPST SAAMPHSQTQ TVVVENPMSV 120 DESGKLVSNV VVGVTTDKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-52 | LSD family protein |