PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062458.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 411aa MW: 47486.2 Da PI: 8.8317

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.7	9.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++n+qvtfskR ng++KKA+ELSvLCd++va+i+fs++ +l +ss XP_028062458.1 9 KRIENNTNKQVTFSKRGNGLIKKAYELSVLCDIDVALIMFSPSARLTHFSS 59 79*********************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGRVKLEIKR IENNTNKQVT FSKRGNGLIK KAYELSVLCD IDVALIMFSP SARLTHFSSP 60 KTRLEDVFTR FINLSDREMS SATSSSPRKD IDCSCTILGS REFLISTLNQ LWIENEVALH 120 QTKFVCLSLS YPEWGQENYC TVFFFLFSSL FFICKSNLDD KQILVSRILS STNSIVLLYF 180 KQRVQEIGIL HQQLETAEEQ LSIFKPDPSN LTSLEELESC KKKLEHILTT VTEKKEYLLN 240 NQASSSSYNQ SCMQVINRIT QDSSFLVISK LSQVLCAHII RLLAIKLAYY RRCCSSNNRC 300 QYFVRTPSLT VCCQIMARTT MPKCSMHLFL LFPSEMLQMQ CMSQCCKGQA HKWIHKACGS 360 AALTNQILRT FQHGTMPMLQ QTPTLCQQQT YFLQFSMGWR SRSWWRHEVI R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGRVKLEIKR IENNTNKQVT FSKRGNGLIK KAYELSVLCD IDVALIMFSP SARLTHFSSP  60
KTRLEDVFTR FINLSDREMS SATSSSPRKD IDCSCTILGS REFLISTLNQ LWIENEVALH  120
QTKFVCLSLS YPEWGQENYC TVFFFLFSSL FFICKSNLDD KQILVSRILS STNSIVLLYF  180
KQRVQEIGIL HQQLETAEEQ LSIFKPDPSN LTSLEELESC KKKLEHILTT VTEKKEYLLN  240
NQASSSSYNQ SCMQVINRIT QDSSFLVISK LSQVLCAHII RLLAIKLAYY RRCCSSNNRC  300
QYFVRTPSLT VCCQIMARTT MPKCSMHLFL LFPSEMLQMQ CMSQCCKGQA HKWIHKACGS  360
AALTNQILRT FQHGTMPMLQ QTPTLCQQQT YFLQFSMGWR SRSWWRHEVI R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	3e-43	MIKC_MADS family protein