PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028062220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28035.8 Da PI: 9.5441 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 32 | 81 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_028062220.1 32 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 81 79***********************************************8 PP | |||||||
2 | K-box | 92.5 | 7.5e-31 | 103 | 193 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++ea+++ +qqe++kL+++i+ +q+++Rh+lGe L+sL++keL++Le++Lek+++++RskKnell+++ie++qk+ e+++++++ +++ XP_028062220.1 103 GSVSEANTQFYQQESTKLRRQIKDIQNSNRHILGEALSSLTFKELKNLESRLEKAISRVRSKKNELLFAEIEHMQKRIAENERAQQQEQEQ 193 3489**************************************************************************9999999876665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MQPLWKMMVF PNQESEEGSS QRKMGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV 60 LCDAEVALIV FSSRGRLYEY ANNSVRATIE RYKKACSDVP NTGSVSEANT QFYQQESTKL 120 RRQIKDIQNS NRHILGEALS SLTFKELKNL ESRLEKAISR VRSKKNELLF AEIEHMQKRI 180 AENERAQQQE QEQEQMNLMP AGGGGGGGMG AYDARNFFPV NLLEPSPPPP NHHYSCHDQT 240 QLQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-103 | MIKC_MADS family protein |