PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062081.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 980aa MW: 109477 Da PI: 8.0179

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.3e-06	191	210	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f G C++G+ C+F H XP_028062081.1 191 PCRDFTL-GKCRRGNECRFLH 210 8****.*********** PP
2	zf-CCCH	23.9	7.2e-08	258	278	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++f++ G C++G++Ck+ H XP_028062081.1 258 LCNDFLK-GRCQRGSSCKYLHH 278 9****.***********6 PP
3	zf-CCCH	18	5.2e-06	308	328	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff+ G C++ d+C+F+H+ XP_028062081.1 308 PPCKFFMM-GKCQR-DNCRFSHD 328 79****.*.*****5 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MSGSARKRKS LWDSKEDIQL PAQINEKNAC HGNENYSNLH VSHDSKLPDL GVDNALKSKD 60 CSGRSSWESS QGNDGQKDES RDFNDIPEIR KARDEGKSYH LSPGSDGWKQ QNHSGNQSRR 120 YRRSRSQSRS RSRSRARDRS RSRSQGRGTS RSRSRSRDRN WGRCRSPLGD YRRESYRSSD 180 RRSGSGVSSQ PCRDFTLGKC RRGNECRFLH QDNLSHRDGG RLERDQAERW RIREERGGNF 240 YDGQKDERPM NSSKSTMLCN DFLKGRCQRG SSCKYLHHDA SGDNSERGNR HSSVDHDYRR 300 QPRKNFNPPC KFFMMGKCQR DNCRFSHDCP APINLEGMPQ DDRQGHDFDD MNKSWDGPKW 360 GEATAVSDIA QSTRWVNVGK GTSIGSITAE KHADDRRGHD FDDMTKSWNG PKWGEAAAVS 420 DVAESTGWGD VGKGTSIGSI TAEKQTDDRR SHCLDDKNKQ WNDPKWGDAT DVSQNAKSTG 480 WCIGNVENVN LTDSMNAEKC ADDSLDNENR MWGSPLWKDK VVDRDENVSR QLGGGSHVVN 540 IGSTGSKDVA KLFDREESRL TSHGLQSQTP YGIPENVQEQ NQMQEASGRQ LATTVMHSVF 600 PVNSQIQQQH HHTKMRDNNA KTDDLNSVNS LDIYGNASHP ALVPVHNFNQ NPDSFGPQPP 660 SFGGVDQSKH MISINPSKGH NIDSNWSLQQ NFSPSNLQNQ TQIQHGESLK PMVNSGLPLN 720 IVDSEQVAQI TNLQASLTQI FGNGQLPQLY AALNLPNSTE LAPSLPDAVT LLPPITLMDA 780 QPDKATMSQN PLGDSTEPNK PGNYSQPPGF LSNSVEQKNK MLSEHSTASA AVGLDNDILD 840 NNGCRVENDH RSPELRQQKP VENSGVEEDS KPIADKCKQE PEKNPAENVN ADASIGDGAN 900 GKDEKAMRLF KIALVEFVKE LLKPKWKEGQ LSREVHKTIV KKVVDKVTST IQGVNVPKTQ 960 DKIDQYLSYS KPKLAKLVEV

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MSGSARKRKS LWDSKEDIQL PAQINEKNAC HGNENYSNLH VSHDSKLPDL GVDNALKSKD  60
CSGRSSWESS QGNDGQKDES RDFNDIPEIR KARDEGKSYH LSPGSDGWKQ QNHSGNQSRR  120
YRRSRSQSRS RSRSRARDRS RSRSQGRGTS RSRSRSRDRN WGRCRSPLGD YRRESYRSSD  180
RRSGSGVSSQ PCRDFTLGKC RRGNECRFLH QDNLSHRDGG RLERDQAERW RIREERGGNF  240
YDGQKDERPM NSSKSTMLCN DFLKGRCQRG SSCKYLHHDA SGDNSERGNR HSSVDHDYRR  300
QPRKNFNPPC KFFMMGKCQR DNCRFSHDCP APINLEGMPQ DDRQGHDFDD MNKSWDGPKW  360
GEATAVSDIA QSTRWVNVGK GTSIGSITAE KHADDRRGHD FDDMTKSWNG PKWGEAAAVS  420
DVAESTGWGD VGKGTSIGSI TAEKQTDDRR SHCLDDKNKQ WNDPKWGDAT DVSQNAKSTG  480
WCIGNVENVN LTDSMNAEKC ADDSLDNENR MWGSPLWKDK VVDRDENVSR QLGGGSHVVN  540
IGSTGSKDVA KLFDREESRL TSHGLQSQTP YGIPENVQEQ NQMQEASGRQ LATTVMHSVF  600
PVNSQIQQQH HHTKMRDNNA KTDDLNSVNS LDIYGNASHP ALVPVHNFNQ NPDSFGPQPP  660
SFGGVDQSKH MISINPSKGH NIDSNWSLQQ NFSPSNLQNQ TQIQHGESLK PMVNSGLPLN  720
IVDSEQVAQI TNLQASLTQI FGNGQLPQLY AALNLPNSTE LAPSLPDAVT LLPPITLMDA  780
QPDKATMSQN PLGDSTEPNK PGNYSQPPGF LSNSVEQKNK MLSEHSTASA AVGLDNDILD  840
NNGCRVENDH RSPELRQQKP VENSGVEEDS KPIADKCKQE PEKNPAENVN ADASIGDGAN  900
GKDEKAMRLF KIALVEFVKE LLKPKWKEGQ LSREVHKTIV KKVVDKVTST IQGVNVPKTQ  960
DKIDQYLSYS KPKLAKLVEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RSRSRSRAR
2	129	139	RSRSRSRARDR
3	131	141	RSRSRSRARDR
4	133	143	RSRSRSRARDR
5	151	159	RSRSRSRAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-10	C3H family protein