PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061845.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20314 Da    PI: 9.61
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.6e-201563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i n+  r +tfskRr+g++KKA+ELS+LC+++ a+++fs  gk + +
  XP_028061845.1 15 KMIANENARRITFSKRRHGLFKKASELSTLCGVDMAIVLFSMGGKAFSF 63
                    6799**************************************9997766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MERKQTQGRK KIEMKMIANE NARRITFSKR RHGLFKKASE LSTLCGVDMA IVLFSMGGKA  60
FSFGKPNVDS IVDRFLNQNA QPSEGVSSHA TGHDDATVHQ LNQQFHDLRK RLEAAKKKEK  120
ILEQLKKSME ELKKNVAQRV DELNSEGSSK HAQEEEQVEN TEINDNDVST IPHDWLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31M-type_MADS family protein