PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028061644.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27076.9 Da PI: 6.9152 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.2 | 2.4e-19 | 20 | 63 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ie+ snrqvtfskRr+g++KKA+ L++L +ae+a+++ s+ XP_028061644.1 20 KKIESVSNRQVTFSKRRAGLFKKASQLCILSGAEIAIVVKSPGK 63 68*************************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MVTMNPTKKT TQGRQKIEIK KIESVSNRQV TFSKRRAGLF KKASQLCILS GAEIAIVVKS 60 PGKRTFAFGQ PSVDAVIDRY LTGTSAAAEQ NNRPSVLDFN EKYAQVSKEL EADKRRRAVI 120 EETKKASNDG GFWWDEAVEE LGLEELEQYV VALEELKKNV SMKADELMIM KANSSMMFGM 180 NESANHGGLG LMSDCATYTV PHGFDCANSS MMFGMNESAN HGGLGLMCDC ATSMIPHGFD 240 FGRGQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-40 | M-type_MADS family protein |