PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028060542.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 733aa    MW: 81290.6 Da    PI: 8.0119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028060542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-08293313526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr++++ G C+ Gd+CkF+H+
  XP_028060542.1 293 YCRHYMK-GRCQEGDKCKFSHD 313
                     5******.*************7 PP

2zf-CCCH21.73.7e-07347367525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++++ +G+C++G+ C F+H
  XP_028060542.1 347 PCNNYLSNGFCSRGPDCLFSH 367
                     7******************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MEESGNVDKE NYSCKVTEAL DLSLDVDIYA ESSRLDENNE QGSSFVERNL LEEVNEMQLM  60
ELEKWVSDCG GLNSLLRVTD DEEIEEGEIS GDFGVYDQSM DLLFEDAVSL EKKNVDEEQN  120
SEATINDEQL TCKKQKVANQ EDTTKSNKNF VETIDNVGKE VELKFRESSM PEMECKSEIA  180
AFGKNGEAKL AHGFDSIIET VRNEKQTARA IEEFNHPAVP GKISRENVTE NQCTLSTEKD  240
AGVRKKKKRG PSTKENKAKK KQKERIKRAE KNRRLGVKRL KIQPVLKPKT VTYCRHYMKG  300
RCQEGDKCKF SHDTIPLTKS KACCHFARHS CMKGDDCPFD HQLSKYPCNN YLSNGFCSRG  360
PDCLFSHEMP LTEGSPSTTN VSKPELKFSS LLKSTNSEKQ LNLNNSSHQK VDSSKNTKQD  420
VVETILKRAV QTQPKGISKL MFGKSALDNR SKLNQVSPIT GVGGVKVGLP MIRGTPDMAQ  480
NSNEITKMTA AVESKGINFL SFGKAPLKDC GIPKSITFDD SNKDKQAASS PKKDVGLKIG  540
NQTAQIARDV IPIWSEMPKR TPTMPPQGIN FLSFGKAALD HPKDNDVVSV QEKETAPRLQ  600
IPSSKPWKQL SSLPSDQSVD QLTDEHGKDT QSSALKALLS NTPNAAQKAR LSNMTNSAQK  660
ALMSTLAFAA KYESRIKMDR PPDGSANFNK ESSSSQSTSR GSTILDFLYG NGSKTNQADI  720
IGQWIPPVIY FGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249RKKKKR