PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028060542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 733aa MW: 81290.6 Da PI: 8.0119 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.7e-08 | 293 | 313 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ Gd+CkF+H+ XP_028060542.1 293 YCRHYMK-GRCQEGDKCKFSHD 313 5******.*************7 PP | |||||||
2 | zf-CCCH | 21.7 | 3.7e-07 | 347 | 367 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ +G+C++G+ C F+H XP_028060542.1 347 PCNNYLSNGFCSRGPDCLFSH 367 7******************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence |
MEESGNVDKE NYSCKVTEAL DLSLDVDIYA ESSRLDENNE QGSSFVERNL LEEVNEMQLM 60 ELEKWVSDCG GLNSLLRVTD DEEIEEGEIS GDFGVYDQSM DLLFEDAVSL EKKNVDEEQN 120 SEATINDEQL TCKKQKVANQ EDTTKSNKNF VETIDNVGKE VELKFRESSM PEMECKSEIA 180 AFGKNGEAKL AHGFDSIIET VRNEKQTARA IEEFNHPAVP GKISRENVTE NQCTLSTEKD 240 AGVRKKKKRG PSTKENKAKK KQKERIKRAE KNRRLGVKRL KIQPVLKPKT VTYCRHYMKG 300 RCQEGDKCKF SHDTIPLTKS KACCHFARHS CMKGDDCPFD HQLSKYPCNN YLSNGFCSRG 360 PDCLFSHEMP LTEGSPSTTN VSKPELKFSS LLKSTNSEKQ LNLNNSSHQK VDSSKNTKQD 420 VVETILKRAV QTQPKGISKL MFGKSALDNR SKLNQVSPIT GVGGVKVGLP MIRGTPDMAQ 480 NSNEITKMTA AVESKGINFL SFGKAPLKDC GIPKSITFDD SNKDKQAASS PKKDVGLKIG 540 NQTAQIARDV IPIWSEMPKR TPTMPPQGIN FLSFGKAALD HPKDNDVVSV QEKETAPRLQ 600 IPSSKPWKQL SSLPSDQSVD QLTDEHGKDT QSSALKALLS NTPNAAQKAR LSNMTNSAQK 660 ALMSTLAFAA KYESRIKMDR PPDGSANFNK ESSSSQSTSR GSTILDFLYG NGSKTNQADI 720 IGQWIPPVIY FGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | RKKKKR |