PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028060541.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 897aa MW: 99484.7 Da PI: 6.553

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028060541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	457	477	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ Gd+CkF+H+ XP_028060541.1 457 YCRHYMK-GRCQEGDKCKFSHD 477 5****.***********7 PP
2	zf-CCCH	21.3	4.6e-07	511	531	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ +G+C++G+ C F+H XP_028060541.1 511 PCNNYLSNGFCSRGPDCLFSH 531 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MEQSHLETLN HSDSLFPFPP HRRRHLKSET FLTLVRILSH CHADSHTSHS HPQGLPKQDS 60 VENELGQATQ GEVCGEPVGP ISMESEILSI QRGALNSTLL GSDECVNEDR METDEFDHVS 120 RVNKELVPEN SIKLVNNTLD KNPSGNVVSL IDNQEGQSSP QEICMEESGN VDKENYSCKV 180 TEALDLSLDV DIYAESSRLD ENNEQGSSFV ERNLLEEVNE MQLMELEKWV SDCGGLNSLL 240 RVTDDEEIEE GEISGDFGVY DQSMDLLFED AVSLEKKNVD EEQNSEATIN DEQLTCKKQK 300 VANQEDTTKS NKNFVETIDN VGKEVELKFR ESSMPEMECK SEIAAFGKNG EAKLAHGFDS 360 IIETVRNEKQ TARAIEEFNH PAVPGKISRE NVTENQCTLS TEKDAGVRKK KKRGPSTKEN 420 KAKKKQKERI KRAEKNRRLG VKRLKIQPVL KPKTVTYCRH YMKGRCQEGD KCKFSHDTIP 480 LTKSKACCHF ARHSCMKGDD CPFDHQLSKY PCNNYLSNGF CSRGPDCLFS HEMPLTEGSP 540 STTNVSKPEL KFSSLLKSTN SEKQLNLNNS SHQKVDSSKN TKQDVVETIL KRAVQTQPKG 600 ISKLMFGKSA LDNRSKLNQV SPITGVGGVK VGLPMIRGTP DMAQNSNEIT KMTAAVESKG 660 INFLSFGKAP LKDCGIPKSI TFDDSNKDKQ AASSPKKDVG LKIGNQTAQI ARDVIPIWSE 720 MPKRTPTMPP QGINFLSFGK AALDHPKDND VVSVQEKETA PRLQIPSSKP WKQLSSLPSD 780 QSVDQLTDEH GKDTQSSALK ALLSNTPNAA QKARLSNMTN SAQKALMSTL AFAAKYESRI 840 KMDRPPDGSA NFNKESSSSQ STSRGSTILD FLYGNGSKTN QADIIGQWIP PVIYFGM

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MEQSHLETLN HSDSLFPFPP HRRRHLKSET FLTLVRILSH CHADSHTSHS HPQGLPKQDS  60
VENELGQATQ GEVCGEPVGP ISMESEILSI QRGALNSTLL GSDECVNEDR METDEFDHVS  120
RVNKELVPEN SIKLVNNTLD KNPSGNVVSL IDNQEGQSSP QEICMEESGN VDKENYSCKV  180
TEALDLSLDV DIYAESSRLD ENNEQGSSFV ERNLLEEVNE MQLMELEKWV SDCGGLNSLL  240
RVTDDEEIEE GEISGDFGVY DQSMDLLFED AVSLEKKNVD EEQNSEATIN DEQLTCKKQK  300
VANQEDTTKS NKNFVETIDN VGKEVELKFR ESSMPEMECK SEIAAFGKNG EAKLAHGFDS  360
IIETVRNEKQ TARAIEEFNH PAVPGKISRE NVTENQCTLS TEKDAGVRKK KKRGPSTKEN  420
KAKKKQKERI KRAEKNRRLG VKRLKIQPVL KPKTVTYCRH YMKGRCQEGD KCKFSHDTIP  480
LTKSKACCHF ARHSCMKGDD CPFDHQLSKY PCNNYLSNGF CSRGPDCLFS HEMPLTEGSP  540
STTNVSKPEL KFSSLLKSTN SEKQLNLNNS SHQKVDSSKN TKQDVVETIL KRAVQTQPKG  600
ISKLMFGKSA LDNRSKLNQV SPITGVGGVK VGLPMIRGTP DMAQNSNEIT KMTAAVESKG  660
INFLSFGKAP LKDCGIPKSI TFDDSNKDKQ AASSPKKDVG LKIGNQTAQI ARDVIPIWSE  720
MPKRTPTMPP QGINFLSFGK AALDHPKDND VVSVQEKETA PRLQIPSSKP WKQLSSLPSD  780
QSVDQLTDEH GKDTQSSALK ALLSNTPNAA QKARLSNMTN SAQKALMSTL AFAAKYESRI  840
KMDRPPDGSA NFNKESSSSQ STSRGSTILD FLYGNGSKTN QADIIGQWIP PVIYFGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	413	RKKKKR