PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028060317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18622.9 Da PI: 9.8707 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+av+ifs +gklye s XP_028060317.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIAVLIFSANGKLYELS 58 79*********************************************977 PP | |||||||
2 | K-box | 49.2 | 2.3e-17 | 80 | 158 | 7 | 85 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + ee++ +++e++ Lk+eie L++ +R + G ++e ++l eL+ Le++Le + +iRs K++++ ++i+ l+ k k XP_028060317.1 80 DHDEEKQVMDSKEEINMLKNEIEFLKKGLRFMSGGGVEAMTLDELHMLEKHLEIWIYHIRSAKMDIMSQEIQLLKTKIK 158 34678888899****************************************************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIAVLIFSA NGKLYELSTK 60 GTMQGLVGRY MKSTGDTQAD HDEEKQVMDS KEEINMLKNE IEFLKKGLRF MSGGGVEAMT 120 LDELHMLEKH LEIWIYHIRS AKMDIMSQEI QLLKTKIKIP RQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-64 | MIKC_MADS family protein |