PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028060316.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 22866.4 Da PI: 7.145

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028060316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+av+ifs +gklye s XP_028060316.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIAVLIFSANGKLYELS 58 79*********************************************976 PP
2	K-box	61.2	4.1e-21	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ee++ +++e++ Lk+eie L++ +R + G ++e ++l eL+ Le++Le + +iRs K++++ ++i+ l+ ke l+ +n++L++k++e XP_028060316.1 80 DHDEEKQVMDSKEEINMLKNEIEFLKKGLRFMSGGGVEAMTLDELHMLEKHLEIWIYHIRSAKMDIMSQEIQLLKTKEGILNAANNYLQEKIDE 173 34678888899********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIAVLIFSA NGKLYELSTK 60 GTMQGLVGRY MKSTGDTQAD HDEEKQVMDS KEEINMLKNE IEFLKKGLRF MSGGGVEAMT 120 LDELHMLEKH LEIWIYHIRS AKMDIMSQEI QLLKTKEGIL NAANNYLQEK IDEQYGTTNY 180 EPVITNPHPL TIQNEIYQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	1e-75	MIKC_MADS family protein