PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028060199.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 397aa    MW: 43527.9 Da    PI: 7.1255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028060199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.97e-13327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +++elCr+f+r G C+yGdrCkF H+
  XP_028060199.1  3 PRRELCRNFQR-GSCQYGDRCKFLHV 27
                    689********.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MPPRRELCRN FQRGSCQYGD RCKFLHVAQQ QQQPKPNVFG YGAQSTTPFH HLNSQQQQQK  60
PNPFGFGVHG SSQPRVPNDF GSKQNQFKPF ENKWTRNGGS QVSRQPDNQP PTANHKCTDP  120
ESCKQQIVED FQHERPLWKL TCYGHNKSSP CDIIGDVSYE ELRAAAYDDA KRGLCLQSIV  180
ERERNLLNAT LLEFENLLRN PYAVPQNPSI ATQSAFPGAT PSVSSMTAQN SNPPSVSSFS  240
QLGASLNMGF GMRPATPTNN AFGSTQISSQ TTNVFETNNS PFGSSGSFGG QLRNQSFGSS  300
FASNAASFSN SAVNAERNPF FTSAVSPQVP SSASFQSSIL PNGPNSASTA VEQLSVNVDT  360
IDNMTRKNGA VDDAIWLKEE WNPGEIPEEA PLDKYIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.24e-73C3H family protein