PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028060170.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 662aa MW: 73268 Da PI: 9.4334

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028060170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.3e-08	234	254	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ Gd+CkF+H+ XP_028060170.1 234 YCRHYMK-GRCQEGDKCKFSHD 254 6****.***********7 PP
2	zf-CCCH	18.9	2.6e-06	288	308	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ +G+C++G+ C F+H XP_028060170.1 288 PCNNYLSNGFCSRGPDCMFSH 308 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MQLMELEKWV SDCGGINSLL RVTDDEEIEE GEISGDFGVY DQSMDLLLED AVSLEKKVDE 60 VQNSEAISND EQFTCKKQKV ANQEDTKSNK NFVETIDNVG KEVELKILSN MPEIECKSEI 120 AVFGKYGEAK LAHGYNSVIE TVRNEQQTAR AIEEFNHPAV PGKISRENAT KNQSTLSTEK 180 DAGVHKEKKR GPKTKENKAK KKQKERIKRA EKNRRLGVKR LKIQPILKPK TVSYCRHYMK 240 GRCQEGDKCK FSHDTIPLTK SKACCHFARH SCMKGDDCPF DHQLSKYPCN NYLSNGFCSR 300 GPDCMFSHEM PLTEGSPSTT NASKPELKFS SLLRGTNSEK QLNLNNSFHQ KVDSSKNTKQ 360 NVVETILKRA VQTQPKGISK LMFGKLALDN PSKLNQVGSS PITGVGGVKV GLPMIRGTPD 420 MAQNSNEITK MTAAVESKGI NFLSFGKAPL KDCGIPKSTS FGDSNKDKQA ASSPKKDVGL 480 KIGNQTGQIT RDVVPIWSEI PKRTPTMPPQ GINFLSFGKV PLDHPKDNDV VSSVQERETA 540 PKRQIPSSKS WKQLSSSLPL GQSVDQLTDE HGKDTPSSAL KALWSNMPNA AQKERLSNMR 600 NSAQKALMST LAFAAEYESR IKMDCPPDVS SNFNKESSSS QNTSRGSTIL DFLYGNGSKT 660 KQ

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MQLMELEKWV SDCGGINSLL RVTDDEEIEE GEISGDFGVY DQSMDLLLED AVSLEKKVDE  60
VQNSEAISND EQFTCKKQKV ANQEDTKSNK NFVETIDNVG KEVELKILSN MPEIECKSEI  120
AVFGKYGEAK LAHGYNSVIE TVRNEQQTAR AIEEFNHPAV PGKISRENAT KNQSTLSTEK  180
DAGVHKEKKR GPKTKENKAK KKQKERIKRA EKNRRLGVKR LKIQPILKPK TVSYCRHYMK  240
GRCQEGDKCK FSHDTIPLTK SKACCHFARH SCMKGDDCPF DHQLSKYPCN NYLSNGFCSR  300
GPDCMFSHEM PLTEGSPSTT NASKPELKFS SLLRGTNSEK QLNLNNSFHQ KVDSSKNTKQ  360
NVVETILKRA VQTQPKGISK LMFGKLALDN PSKLNQVGSS PITGVGGVKV GLPMIRGTPD  420
MAQNSNEITK MTAAVESKGI NFLSFGKAPL KDCGIPKSTS FGDSNKDKQA ASSPKKDVGL  480
KIGNQTGQIT RDVVPIWSEI PKRTPTMPPQ GINFLSFGKV PLDHPKDNDV VSSVQERETA  540
PKRQIPSSKS WKQLSSSLPL GQSVDQLTDE HGKDTPSSAL KALWSNMPNA AQKERLSNMR  600
NSAQKALMST LAFAAEYESR IKMDCPPDVS SNFNKESSSS QNTSRGSTIL DFLYGNGSKT  660
KQ