PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028060149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | NF-YC | ||||||||
Protein Properties | Length: 216aa MW: 24366.3 Da PI: 4.4627 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 32.7 | 1.7e-10 | 113 | 199 | 13 | 99 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +t h +P+ ri +i+k+++ +i+ e+ l+ ka e f+ + ++ a +++ ++ ++++v++ fdfl d vp + XP_028060149.1 113 ETAASSHCFPIHRISRIIKSEDPDIRIAQESVFLINKASEKFLELFCKEAYGCAFLDRKKHVEYKHMSSVVSKRRRFDFLSDFVPVK 199 45566899***********86555579***************7666677888888889999***********************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MEDKSQIQSK NKNTNENKKT NSNNGTESDD EPDLLHVVVP NSSSDSQNDG EDQDEDEDED 60 GVAQVEHSYE DDDNGDDEEA TSKEITNQPR NNAKNGDDEG EKEDSTKIKS RNETAASSHC 120 FPIHRISRII KSEDPDIRIA QESVFLINKA SEKFLELFCK EAYGCAFLDR KKHVEYKHMS 180 SVVSKRRRFD FLSDFVPVKA KAKAEDTLSE LSSAKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 188 | RKKHVEYKHMSSVVSKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 5e-25 | NF-YC family protein |