PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028059352.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26089.7 Da    PI: 9.2704
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028059352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s
  XP_028059352.1  9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSSTGKLHEFIS 59
                    79***********************************************86 PP
2K-box97.32.4e-3271168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g +l+ +++e++q++l+kLk+ ++nL++e+R+++G++L++Ls++eL  Leq++e+s+k iR++K+++l +qie+++kk+++++e++++L 
  XP_028059352.1  71 YQKALGIDLWCSHYERMQEHLKKLKDVNKNLRTEIRQRMGDCLNDLSYEELCGLEQDMESSVKIIRDRKYKVLNNQIETQKKKKRNVEEIHRNLL 165
                     78899999**************************************************************************************9 PP

           K-box  96 kkl 98 
                     +++
  XP_028059352.1 166 HQV 168
                     997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMVSS TGKLHEFISP  60
STSTKQMYDQ YQKALGIDLW CSHYERMQEH LKKLKDVNKN LRTEIRQRMG DCLNDLSYEE  120
LCGLEQDMES SVKIIRDRKY KVLNNQIETQ KKKKRNVEEI HRNLLHQVNS KEEDPQYGLV  180
DNGVDYNSIL GFSNGGHGIL ALRLQPNHHN LHDGAGSDLT TYALLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-97MIKC_MADS family protein