PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028058899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 339aa MW: 38106.8 Da PI: 8.2542 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 128 | 148 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G+Ck Gd C FaHg XP_028058899.1 128 ACPEFRK-GQCKKGDLCEFAHG 148 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MMVITSETTR SNTIVHVPPW NLLDDPTATT VNLYRNATGD TTNFEALAAL HRYLPSNTTT 60 AAADSDFLSD DYHIPLGAFS CDHFRMFDFK VKKCARANSH DWTECPYLHA GEKARRRDPR 120 KFHYSGTACP EFRKGQCKKG DLCEFAHGVF ECWLHPSRYR TQPCKDGTHC RRRVCFFAHT 180 PDQLRVLPQT SPRTTDSYDG SLSRLGSSPT STLYSPSDSP NVNSVSELSW SMMKNLQIGK 240 VRMSMSPTSQ MGSECCSPRS PSGLRSGFSS LPSTPTRTPS RSGFDFWDQT CEEEPVMERV 300 ESGRDLRAKI YAKLSKENSL KRVDLAPGPD FGWVSELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-109 | C3H family protein |