PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058458.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 349aa MW: 39445.9 Da PI: 4.7967

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.7	2.6e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s XP_028058458.1 9 KRIENNTSRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	23.4	2.5e-09	112	188	11	87
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +++ae+lqqe+++L+ ++++ ++++ + + L+ s++eL++ e++L +s++++ ++K+ l+ ++++ ++ ++ XP_028058458.1 112 NSTAEELQQEINNLQHQLQMAEEQLSIFEPDILGCTSMEELESCEKNLLESMNHVIQRKKYLMGDHLSSFDHQSMQM 188 466899***************999999999*******************************999887776665 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRVKLQIKR IENNTSRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVLSRY INLADHDRGG ILQNREYLIT TLKKLKNEDD MALEFASPTE LNSTAEELQQ 120 EINNLQHQLQ MAEEQLSIFE PDILGCTSME ELESCEKNLL ESMNHVIQRK KYLMGDHLSS 180 FDHQSMQMNS LGQMFFEAQV GMPTTSFQND LVSWMPQNGD NQNHIFGSSH DHPCIPLRND 240 SPTTIYNSLS HATDENGEPN SISGCPIHSP NDDHSLSQWH HACTSSLFSS LMPSTAFPQN 300 DMEVSPPDIA AAEQHHHQVE ATSTCLEVPS NEEDGNFENK LPELNMESS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRVKLQIKR IENNTSRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLSRY INLADHDRGG ILQNREYLIT TLKKLKNEDD MALEFASPTE LNSTAEELQQ  120
EINNLQHQLQ MAEEQLSIFE PDILGCTSME ELESCEKNLL ESMNHVIQRK KYLMGDHLSS  180
FDHQSMQMNS LGQMFFEAQV GMPTTSFQND LVSWMPQNGD NQNHIFGSSH DHPCIPLRND  240
SPTTIYNSLS HATDENGEPN SISGCPIHSP NDDHSLSQWH HACTSSLFSS LMPSTAFPQN  300
DMEVSPPDIA AAEQHHHQVE ATSTCLEVPS NEEDGNFENK LPELNMESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	8e-86	MIKC_MADS family protein