PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058069.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 728aa MW: 84290.8 Da PI: 8.1186

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.3	3.9e-16	44	111	21	90
FAR1 21 kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + +++i +r+f C keg++ +e+ e+++ ++ etrtgCka ++++ e dg w+vt+++ eHnHela XP_028058069.1 44 YYSGSKNIRQREFLCCKEGFKVDEDPF-EEKKLNKLETRTGCKAFVRLTVE-DGIWKVTTFNPEHNHELA 111 44567889*************9999.99999*************9.**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MLNDKVMNDE DFRIKEEINT SNDAKKGERD CMFVASILKG KPRYYSGSKN IRQREFLCCK 60 EGFKVDEDPF EEKKLNKLET RTGCKAFVRL TVEDGIWKVT TFNPEHNHEL ALQSERHLQR 120 FARHISKPKA DVIDSMVNAG ISTKNAYSYL REEVGGNENV GFTKRDCYNY VNKQKMTMIS 180 VGDAQSLLNH FKKKHTEDPM FFFIVQVDQK NRMTNFFWRD RRSRVNYDCF GDVVVFYTTY 240 HTNKYNLICA PFVGVNHHWQ NVMFGCAFLL DETTDSFIWL FKSFLESMGN RSPITIFTDQ 300 DKAMSNAIQV VFPNTHHRLC LWHILKNAPS HLGELNTSTE FKYLFNKCKK YCDSTLEFQQ 360 TWDNVIQKFS LESHRWLNMM YKIRHKWSTA CTKDSFTAEF KASSRSESTN NVLNNIAVAG 420 MRSSELDEDF GCKQGAPQKQ VDCQDTVDVF ELKEENSERV HIVHFDHLTN NISCSCKKFE 480 SLGVLCCHAL RVFSVKNLTA IPSQYILKRW AKDAKKGIMA YEQRTNSIAN AKEAEIIWRN 540 SMIRIVNTTI YKSQGNDSLK NICQKILIEL DEKIEREFER LRLGTDMHIE EDQTVQCDTT 600 NMSVLDPPQA RSKGKSKQVK QGPSHASLAV TYDITIFQPP NGSPYVRPAD ANIHGQSHPP 660 WAMHTQDMDF ANIPFTTMLQ SVDVVNQFSQ KNDSHAEKLR KQLCCHCCIR DYKERDAIAA 720 KNVNERDV

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MLNDKVMNDE DFRIKEEINT SNDAKKGERD CMFVASILKG KPRYYSGSKN IRQREFLCCK  60
EGFKVDEDPF EEKKLNKLET RTGCKAFVRL TVEDGIWKVT TFNPEHNHEL ALQSERHLQR  120
FARHISKPKA DVIDSMVNAG ISTKNAYSYL REEVGGNENV GFTKRDCYNY VNKQKMTMIS  180
VGDAQSLLNH FKKKHTEDPM FFFIVQVDQK NRMTNFFWRD RRSRVNYDCF GDVVVFYTTY  240
HTNKYNLICA PFVGVNHHWQ NVMFGCAFLL DETTDSFIWL FKSFLESMGN RSPITIFTDQ  300
DKAMSNAIQV VFPNTHHRLC LWHILKNAPS HLGELNTSTE FKYLFNKCKK YCDSTLEFQQ  360
TWDNVIQKFS LESHRWLNMM YKIRHKWSTA CTKDSFTAEF KASSRSESTN NVLNNIAVAG  420
MRSSELDEDF GCKQGAPQKQ VDCQDTVDVF ELKEENSERV HIVHFDHLTN NISCSCKKFE  480
SLGVLCCHAL RVFSVKNLTA IPSQYILKRW AKDAKKGIMA YEQRTNSIAN AKEAEIIWRN  540
SMIRIVNTTI YKSQGNDSLK NICQKILIEL DEKIEREFER LRLGTDMHIE EDQTVQCDTT  600
NMSVLDPPQA RSKGKSKQVK QGPSHASLAV TYDITIFQPP NGSPYVRPAD ANIHGQSHPP  660
WAMHTQDMDF ANIPFTTMLQ SVDVVNQFSQ KNDSHAEKLR KQLCCHCCIR DYKERDAIAA  720
KNVNERDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-98	FAR1 family protein