PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057472.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 273aa    MW: 29922.7 Da    PI: 7.7558
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-304107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q+
  XP_028057472.1   4 SCNGCRVLRKGCTDSCSIRPCLewikcPDSQAHATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRLVNPIYGSVGLLWSGNWSLCQK 98 
                     6*************************99******************************************************************* PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_028057472.1  99 AVEAVLKGA 107
                     **9998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MRMSCNGCRV LRKGCTDSCS IRPCLEWIKC PDSQAHATVF LAKFYGRAGL INLINAGPQH  60
LRPAIFRSLL YEACGRLVNP IYGSVGLLWS GNWSLCQKAV EAVLKGAPIT RIESEDAERN  120
NGPPLKAYDI RHVSKGDSAG SSDLHRVRTR SKFKKSGVKK PKTRLSVGSG DDSGHEEMNR  180
STSHESSLSH QSEFAANVEV ESLEASFLHR AEPKSDAKPN DGAVEDGEVE LELTLGFEPI  240
SRSHHSVNTK ENAIGRFSDS AADDGECRME LRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-91LBD family protein