PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028057153.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-X1

Protein Properties

Length: 872aa MW: 97799.4 Da PI: 8.2453

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028057153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16	2.6e-05	188	206	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_028057153.1 188 CG-HYCLLLCHPGPCPSCPK 206 .*************96 PP
2	zf-NF-X1	25.5	2.8e-08	240	258	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CHeG+CppC+ XP_028057153.1 240 CGTHRCGETCHEGDCPPCR 258 ******************8 PP
3	zf-NF-X1	18.1	6.1e-06	400	419	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_028057153.1 400 CGRHACKRRCCDGDCPPCSE 419 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence
MISTIHNHNH NHPSLSDSEP DSDTSPTAAG AEGGLRHNDL SDTIFRSYIE LTGHSSPDLS 60 KIQSFLTSSR SGALSCLICL ERIRLSDPTW SCSSRCFAVF HLLCIQSWAR QSSDLSASRA 120 TSRLPISASK AAEDSIWNCP KCRIDYPKTL IPRKYLCFCQ KLEDPPSDPW ILPHSCGEVC 180 NRPLKHNCGH YCLLLCHPGP CPSCPKLVKS HCFCGAVEDV RRCGFKNFSC NGVCSKLLDC 240 GTHRCGETCH EGDCPPCRAW GVYRCQCGKV EEKRECCDRN FQCEVPCQRL LGCEKHLCSR 300 GCHWGECGEC PLQGKRTCPC GKRAYEGIAC DVPLPLCGAT CDKMLSCGFH RCPERCHRGP 360 CIETCRVVVT KSCRCGSLRK EVPCHQDLAC ERKCQRVRDC GRHACKRRCC DGDCPPCSEI 420 CDRRLRCKNH KCPAPCHRGV CAPCPVMVTI SCACGETHFE VPCGTEKEQK PPRCPKPCCI 480 IPLCRHGPNC KPHKCHYGAC PSCRLICEEE YPCGHNCKLR CHGPKPPPNP EFTLKPKKKK 540 SKHHSECIPG SPCPPCPELV WRSCVGEHVG EERMMVCSNI AEYSCNNLCG NLLPCGNHYC 600 TKVCHALKSQ SSSLGRHGRG EFCEECDLPC QKERQPACPH PCPRPCHLGE CPPCKVLIRR 660 SCHCGSMVHV FECLYYNSMS EKEQMTVRSC GGPCHRKLPY CTHLCPEICH PGQCPAPEKC 720 SEKVTVRCGC QTLKKEWLCH EVQAAYHSAR SDLKDISKNQ YGLGLLPCNS GCRSKVKVAD 780 TELQHRKSTV LKDKEADAEN YVPKRRKRRE RAKEAKQISR LQKFTAAMWR LLLFVTLVLA 840 LIAATYYGYK GLLWLSDWMN EVEVQRQRRR YP

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence

MISTIHNHNH NHPSLSDSEP DSDTSPTAAG AEGGLRHNDL SDTIFRSYIE LTGHSSPDLS  60
KIQSFLTSSR SGALSCLICL ERIRLSDPTW SCSSRCFAVF HLLCIQSWAR QSSDLSASRA  120
TSRLPISASK AAEDSIWNCP KCRIDYPKTL IPRKYLCFCQ KLEDPPSDPW ILPHSCGEVC  180
NRPLKHNCGH YCLLLCHPGP CPSCPKLVKS HCFCGAVEDV RRCGFKNFSC NGVCSKLLDC  240
GTHRCGETCH EGDCPPCRAW GVYRCQCGKV EEKRECCDRN FQCEVPCQRL LGCEKHLCSR  300
GCHWGECGEC PLQGKRTCPC GKRAYEGIAC DVPLPLCGAT CDKMLSCGFH RCPERCHRGP  360
CIETCRVVVT KSCRCGSLRK EVPCHQDLAC ERKCQRVRDC GRHACKRRCC DGDCPPCSEI  420
CDRRLRCKNH KCPAPCHRGV CAPCPVMVTI SCACGETHFE VPCGTEKEQK PPRCPKPCCI  480
IPLCRHGPNC KPHKCHYGAC PSCRLICEEE YPCGHNCKLR CHGPKPPPNP EFTLKPKKKK  540
SKHHSECIPG SPCPPCPELV WRSCVGEHVG EERMMVCSNI AEYSCNNLCG NLLPCGNHYC  600
TKVCHALKSQ SSSLGRHGRG EFCEECDLPC QKERQPACPH PCPRPCHLGE CPPCKVLIRR  660
SCHCGSMVHV FECLYYNSMS EKEQMTVRSC GGPCHRKLPY CTHLCPEICH PGQCPAPEKC  720
SEKVTVRCGC QTLKKEWLCH EVQAAYHSAR SDLKDISKNQ YGLGLLPCNS GCRSKVKVAD  780
TELQHRKSTV LKDKEADAEN YVPKRRKRRE RAKEAKQISR LQKFTAAMWR LLLFVTLVLA  840
LIAATYYGYK GLLWLSDWMN EVEVQRQRRR YP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	803	809	PKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein