PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056864.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 298aa MW: 31673.1 Da PI: 9.8314

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29	1.9e-09	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_028056864.1 105 KTKLCNKFNTAEGCKFGDKCRFAHGE 130 8***********************96 PP
2	zf-CCCH	32.8	1.1e-10	265	289	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C fa+ G C +G+rC+FaHg XP_028056864.1 265 YKTKMCESFAK-GSCTFGERCHFAHG 289 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MVMEFGRKRG NPNSGFIGNE GNKKSKQEME SFASTGIGRK SKPCMKFFST SGCSFGDGCH 60 FLHYVPGGFS AVAQMTNLGG NPIPPVRNGM APPPPFSDGP APTAKTKLCN KFNTAEGCKF 120 GDKCRFAHGE WELGKPNIPT YEDPRSMGSM GTRLTGRVEP HQPNLAAAAN FGASATAKIS 180 IDASLGGAII GKGGVNSKQI CRLTGVKLSI KEHDSDPNQK NIELEGTFDQ IKQASAMVRD 240 LIMNVGAVNR PTKPTHAAAP ASNNYKTKMC ESFAKGSCTF GERCHFAHGA GELRKPVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	8e-75	C3H family protein