PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028056761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 342aa MW: 38584.5 Da PI: 7.2253 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.8e-06 | 124 | 144 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd C FaHg XP_028056761.1 124 ACPEFRK-GNCKKGDGCEFAHG 144 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence |
MMIGERNHFP NPTVHVPPWS LLHDPTVDNC FQYGVTNNAD EYPPYDALAA LYRYLPSNDV 60 DLDSDELVGE SDHGVDSDNF RMFEFKVRKC TRGRSHDWTE CPFAHPGEKA RRRDPRKYHY 120 SGTACPEFRK GNCKKGDGCE FAHGVFECWL HPARYRTQPC KDGSNCRRRV CFFAHSPDQL 180 RVLSSRTPGL PESYDGSPQR LAFMSPESVS PPSESPPLSP SLGSNSINEM VLSLRQLQLN 240 KVKSMPSSWG LQMSGSGFGS PRLSMTRPTF CSLPSTPTMT PTRKVIGPFD LEEEPVMERV 300 ESGRDLRVKM FEKLSRENPL DRAEPKQPSP GPDVGWVSEL VK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-124 | C3H family protein |