PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056653.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 367aa MW: 41583.8 Da PI: 6.1401

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.3	5.9e-16	45	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_028056653.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 104 57*****************999955656446***********************98 PP
2	AP2	52.8	9.8e-17	147	199	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g+ XP_028056653.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRGH 199 89**99******99966...3.6************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MELSQQNTKN NAKCTSNTKT NTSSAMKVKR TRKTIPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQV YLGAYDDEEA AAHAYDLAAL KYWGPETILN FPLPTYQKQL 120 IEMEGISREE FIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAAIAYD MAAIEYRGHN AVTNFDLSGY ITWLRPKNNN TNQPKVSNVE TNLTTTHTTN 240 YELGSNFQHE QTTTAITCSS SDVAPTQSRP ATAAASALGL LLQSSKFKEM MEMTSATDEY 300 YCPSTPQEEE EEESSDPPPQ SQCSFPSDIQ TYFDSQSHED FGVYGDDGHD VIFGELELEL 360 NSFIFDA

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MELSQQNTKN NAKCTSNTKT NTSSAMKVKR TRKTIPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQV YLGAYDDEEA AAHAYDLAAL KYWGPETILN FPLPTYQKQL  120
IEMEGISREE FIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAAIAYD MAAIEYRGHN AVTNFDLSGY ITWLRPKNNN TNQPKVSNVE TNLTTTHTTN  240
YELGSNFQHE QTTTAITCSS SDVAPTQSRP ATAAASALGL LLQSSKFKEM MEMTSATDEY  300
YCPSTPQEEE EEESSDPPPQ SQCSFPSDIQ TYFDSQSHED FGVYGDDGHD VIFGELELEL  360
NSFIFDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-92	AP2 family protein