PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028056560.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92062.2 Da    PI: 6.2365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028056560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_028056560.1 19 KYVRYTPEQVEALERVYHECPKPSSLRRQQLIRECpilsNIDPKQIKVWFQNRRCREKQ 77
                    5679*****************************************************97 PP
2START182.23e-571633712205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++++++l+v+s+g  g+++l 
  XP_028056560.1 163 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVVEILKDRP-SWYHDCRAVDVLNVLSTGnsGTIELL 256
                     789*******************************************************9998888888.************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRa++lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_028056560.1 257 YMQVYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQHFVRAGMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 351
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  +++t++a+l+++++
  XP_028056560.1 352 ESSTLLAQRTTMAALRQLRQ 371
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    
MMGVTSACKE SKMGMDNGKY VRYTPEQVEA LERVYHECPK PSSLRRQQLI RECPILSNID  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENSYFR  120
QQTQNANLAT TDTSCESVVT SGQQHLTPQH PPRDASPAGL LSIAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCTGVAAR ACGLVGLEPT RVVEILKDRP SWYHDCRAVD  240
VLNVLSTGNS GTIELLYMQV YAPTTLAPAR DFWLLRYTSV LEDGSLVVCE RSLNNTQNGP  300
SMPPVQHFVR AGMLPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLAQR  360
TTMAALRQLR QISQEVSQPT VTGWGRRPAA LRALSQRLSK GFNEAVNGFT DEGWSIIEND  420
GIDDVTLLVN SSPGKVMGAN PSYANGFPSM SNAVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSGIDAY SAASVKAGPC NLAGPQAGSF GGQVILPLSH TIEHEEFMEV IKLENFGLYR  540
DDMIMPGDIF LLQLCGGVDE NAIGTCAELI FAPIDASFSD DAPLLPSGFR IIPLDSGTDA  600
SSPNRTLDLA SSLEVGPTGN RGSGDHSGHG RNGKSVMTIA FQFAFEIHLQ ENIAAMARQY  660
VRSIIASVQR VALALSPSHL GSHAGLRSLP GTPEAQTLAR WICHSYRCFL GVELLKPDND  720
GSESILKSLW HHSDAVMCCS LKALPVFTFA NQAGLDMLET TLVALQDITL EKILDDHGRK  780
ALSSELPQIM QQGFACLQGG VCLSSMGRPV SYERAVAWKV LSDDETAHCI CFMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein