PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028056282.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 42740 Da PI: 7.758 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 1.9e-11 | 39 | 64 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_028056282.1 39 GEPDCSYYIRTGLCRFGATCRFNHPP 64 6899********************97 PP | |||||||
2 | zf-CCCH | 36.5 | 8.1e-12 | 92 | 115 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H+p XP_028056282.1 92 TECAYYLRTGQCKFGSTCKFHHPP 115 68********************97 PP | |||||||
3 | zf-CCCH | 38.1 | 2.6e-12 | 251 | 277 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_028056282.1 251 PGQPECQFYMKTGDCKFGAVCRFHHPR 277 5789*********************96 PP | |||||||
4 | zf-CCCH | 40.3 | 5.1e-13 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_028056282.1 297 PGEPLCIFYSRYGICKFGPSCKFDHPM 323 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence |
MEYDAGISMS QPYDEDTLWQ MNLRSSETME LGPYPVREGE PDCSYYIRTG LCRFGATCRF 60 NHPPNRKLAI ATARMKGEYP ERIGQPECQN ETECAYYLRT GQCKFGSTCK FHHPPPSNMM 120 VSLRGSPVYP SAHSPTTADQ QSYPGGIANW PLSRASFIPS PRWQGPSSYG PMILPQGVVS 180 VPGWNAYSGQ LSSMSSPESQ QQTAGNSIYG NSRQSEAANA GSQGTLSPYR SGSVPVGYYA 240 LQRENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL IPAPDCVLSP IGLPLRPGEP 300 LCIFYSRYGI CKFGPSCKFD HPMGVLTYNL AASSSSADAP VVRRLLASSS GSGVLALSSE 360 GLVEAGSSKP RRLSLSESRS MPSGDDKIDT EG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-142 | C3H family protein |