PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056265.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 567aa MW: 66305.6 Da PI: 8.0021

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	76	165	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YAk GFs+r+++ +k k+n +++r +vCskeg+r+++ + +e++r++++ tr+gC+a++++k ++ ++k+ev+++ +eHnH++ XP_028056265.1 76 RFYNSYAKVKGFSIRRDQLYKDKNNM-VISRSWVCSKEGYRQSKYLEvEERKREPKQLTRVGCRACFRIKYNRsTSKYEVNEFFKEHNHSM 165 5******************96666.9***********998867888899************999*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MSRFDKMEDN TEQHKNNIIY ELVDDDGNDG EYNIHNEDDI VNSNNIPTER DIKRLDELTE 60 NDVFEMTFDS EENGERFYNS YAKVKGFSIR RDQLYKDKNN MVISRSWVCS KEGYRQSKYL 120 EVEERKREPK QLTRVGCRAC FRIKYNRSTS KYEVNEFFKE HNHSMIGPLG VQFLRSHRNV 180 TSADKAQGNA MHHVGMRTSH IMDFAAQQAG GYENVGFIQK DMYNHFGTER RVQVVDGDTK 240 GALAYFCGKE EQDPMFYYKY DVDEENRLNN LFWTDGGSRT DYLYFGDVLM FDTTYRTNAY 300 NKPFVILQAF ETVETYIWVL EKFLDAMDHK MPLSVITDGD KAMCRAIKTV MPTARHRLCK 360 WHFKMNALSN IHIEGFLHSF EKCMSMQCTQ EMFELEWKNL VDKYGLHNNK WIADVYCKRT 420 LWAEGYLHGH FFAGAKSTQR CESMNAFLNR FLKVRLRLFE FVRAYDRALA RLRHNEAKAQ 480 SETENTTPIL STGNGTKGKT NVEGTCLHFG VGDPPFTKTK GNRSVANDKF SKSRKCGHCR 540 NKVVNEFYIL NGSDYRNRTY NGPSWAQ

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MSRFDKMEDN TEQHKNNIIY ELVDDDGNDG EYNIHNEDDI VNSNNIPTER DIKRLDELTE  60
NDVFEMTFDS EENGERFYNS YAKVKGFSIR RDQLYKDKNN MVISRSWVCS KEGYRQSKYL  120
EVEERKREPK QLTRVGCRAC FRIKYNRSTS KYEVNEFFKE HNHSMIGPLG VQFLRSHRNV  180
TSADKAQGNA MHHVGMRTSH IMDFAAQQAG GYENVGFIQK DMYNHFGTER RVQVVDGDTK  240
GALAYFCGKE EQDPMFYYKY DVDEENRLNN LFWTDGGSRT DYLYFGDVLM FDTTYRTNAY  300
NKPFVILQAF ETVETYIWVL EKFLDAMDHK MPLSVITDGD KAMCRAIKTV MPTARHRLCK  360
WHFKMNALSN IHIEGFLHSF EKCMSMQCTQ EMFELEWKNL VDKYGLHNNK WIADVYCKRT  420
LWAEGYLHGH FFAGAKSTQR CESMNAFLNR FLKVRLRLFE FVRAYDRALA RLRHNEAKAQ  480
SETENTTPIL STGNGTKGKT NVEGTCLHFG VGDPPFTKTK GNRSVANDKF SKSRKCGHCR  540
NKVVNEFYIL NGSDYRNRTY NGPSWAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-83	FAR1 family protein