PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028056208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 295aa MW: 33898.2 Da PI: 6.9112 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 8.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s XP_028056208.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSIFS 58 68********************************************8876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSIFSGN 60 KSMEEIMARY VNLPEHERGR LHNQEYLQRA LAKLKDHNNY QAGAVSPVNA DSQLEEIQQE 120 IHKSRSQLEE MEKRLKIFEG HPSEITTVCE AQRREHILEE TLKCVRIRKR VLEEKYDHSN 180 AQLTSQPQPQ RDSQQVQIMN FLDSNGLLPL REQGHGIGNN MLRPPSSFLN GQNMQLDDQT 240 SPSSCGMEDD DNNINNLRLQ HQPHFGIDTI DANISPWTTT PTQFYPTGEQ LKDLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 4e-50 | MIKC_MADS family protein |