PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056207.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 320aa MW: 36590.3 Da PI: 6.5878

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.2	9.2e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s XP_028056207.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSIFS 58 68********************************************8876 PP
2	K-box	14.7	1.3e-06	106	167	9	70
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++++ e+ qqe+ k ++++e++++ ++ + G e ++ e q+ e+ Le+ lk +R +K XP_028056207.1 106 NADSQLEEIQQEIHKSRSQLEEMEKRLKIFEGHPSEITTVCEAQRREHILEETLKCVRIRKR 167 68999******************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSIFSGN 60 KSMEEIMARY VNLPEHERGR LHNQERALAK LKDHNNYQAG AVSPVNADSQ LEEIQQEIHK 120 SRSQLEEMEK RLKIFEGHPS EITTVCEAQR REHILEETLK CVRIRKRVLE EKYDHSNAQL 180 TSQVNLPLEP VLNVNGLVTT NPNLILDWMP QPQPQRDSQQ VQIMNFLDSN GLLPLREQGH 240 GIGNNMLRPP SSFLNGQNMQ LDDQTSPSSC GMEDDDNNIN NLRLQHQPHF GIDTIDANIS 300 PWTTTPTQFY PTGEQLKDLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-47	MIKC_MADS family protein