PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028056206.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 323aa    MW: 36994.8 Da    PI: 6.5877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028056206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.3e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  XP_028056206.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSIFS 58
                    68********************************************8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSIFSGN  60
KSMEEIMARY VNLPEHERGR LHNQEYLQRA LAKLKDHNNY QAGAVSPVNA DSQLEEIQQE  120
IHKSRSQLEE MEKRLKIFEG HPSEITTVCE AQRREHILEE TLKCVRIRKR VLEEKYDHSN  180
AQLTSQVNLP LEPVLNVNGL VTTNPNLILD WMPQPQPQRD SQQVQIMNFL DSNGLLPLRE  240
QGHGIGNNML RPPSSFLNGQ NMQLDDQTSP SSCGMEDDDN NINNLRLQHQ PHFGIDTIDA  300
NISPWTTTPT QFYPTGEQLK DLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.17e-50MIKC_MADS family protein