PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028056019.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 450aa    MW: 50666.7 Da    PI: 7.9188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028056019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-06730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++  +C+FaHg
  XP_028056019.1  7 FKTKLCVLYQK-GHCPR-QTCSFAHG 30
                    69*********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MVERKLFKTK LCVLYQKGHC PRQTCSFAHG DAELRRFSAS FNGRRDYRNS DLRDKIDRRH  60
SPPRRYSPER DTRGRHTLRG YSPISSPGKS DRKRRKKHQL DGQSDFSGSA KISDGSDDRI  120
RHRKLTSSDS KGVLGEQLSQ VQTEINMLNS HKGQLEIYLE ESVQEVDCLN SQIQELEMQL  180
CQEKEECKRI TSKIKKFVKA HNRYSRLQDE LKRSHDRLQK LGDHLGSDAA RLGATEDSSI  240
NILSDGEPAG NHAMSPPNQL QKNVSPNKKR LQVNVEAAEE SKSANLMKGE GTMMGTIRLQ  300
KNSRWNMQHF QYNNNKEAEI EDNGNNNRRT LANEDMPKRG KNLFTNVSSA EKFKGSEPGL  360
ILPPTSMAAH AVDEVLETIE VEDLEVVETA SAGVHKGGTS GIPGLPFPLP PPPPPPPRPV  420
PQNGYPQYQG EDENVDVEAL EEEMVDVDIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-56C3H family protein