PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028055935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25268.4 Da PI: 6.4949 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.4 | 9.2e-28 | 6 | 107 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l++ + ++q++++ +v+k+FG++ ++++l+++p+++r+++++sl++e + ++ +Pv+Gavg++++++++++q+ XP_028055935.1 6 SCNGCRVLRKGCNDNCILRQSIqgietSQAQANATVFVAKFFGRAGLMSFLSSVPDSQRPALFQSLLFEVCGCTVNPVNGAVGLLWTGNWHVCQA 100 6*********************9998777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_028055935.1 101 AVETVLR 107 *998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MCREMSCNGC RVLRKGCNDN CILRQSIQGI ETSQAQANAT VFVAKFFGRA GLMSFLSSVP 60 DSQRPALFQS LLFEVCGCTV NPVNGAVGLL WTGNWHVCQA AVETVLRGGV LRPIPEFSGE 120 TPADEFDDAS NNNTKSMDFF GSLDLHSASK VKDFNELTAR SQPIADLDLC LEQSLKTAGG 180 RVNRRPEKRR AETPSSSKSE ESETTTLESG GSAYNQTLQG GRNEGKLLRL FF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-66 | LBD family protein |