PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055625.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 474aa MW: 50922.9 Da PI: 8.6682

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.3e-11	46	71	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C f++rtG C yG++C+++H++ XP_028055625.1 46 GVPDCAFYMRTGSCGYGSKCRYNHPR 71 5799********************96 PP
2	zf-CCCH	37.8	3.2e-12	95	117	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG+Ck+G++CkF+H++ XP_028055625.1 95 TCQYYSRTGICKFGASCKFHHPR 117 6********************96 PP
3	zf-CCCH	38.4	2e-12	137	163	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G CkF H++ XP_028055625.1 137 PGERECSYYLKTGQCKFGVACKFDHPQ 163 5789*********************97 PP
4	zf-CCCH	39	1.3e-12	294	320	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+F+H+p XP_028055625.1 294 PGQPDCQYYLKTGDCKFGSSCRFHHPP 320 5789*********************97 PP
5	zf-CCCH	35.4	1.8e-11	341	365	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++C+F H+ XP_028055625.1 341 GVQPCAFYMQNGHCKFGSTCRFDHP 365 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEFYGRSTGR DGSESGWPVG SETGLEESMQ RFGLWSRELP YPERSGVPDC AFYMRTGSCG 60 YGSKCRYNHP RDRSSVGATV RFGRGEYPER PGELTCQYYS RTGICKFGAS CKFHHPRNGG 120 GSMSNMRVNI YGYPLRPGER ECSYYLKTGQ CKFGVACKFD HPQPGGMSMP EPAHQFYPTV 180 QSSSSVPSFD PYGAASPSYR TGRPPPLPGS YVPGAYGPVL LSPGVVPISG WSPYAGPVSP 240 VLSPSAPHSV GAGSPYGVTQ LPSSASAFVG PYPTFPSPAG PSSSTQERGF PERPGQPDCQ 300 YYLKTGDCKF GSSCRFHHPP DWVVSKTNCL LSSMGLPMRP GVQPCAFYMQ NGHCKFGSTC 360 RFDHPIRTVR YSPSASSLSD MLVAPYLVGS SLATLAPPFS NSEPRPEFIS GPILDPPHSS 420 RTPSSGNTSS SSVGFIYSQT VSASLSDVQQ SSQSSAPLSI STSTRQGVEV RRSS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEFYGRSTGR DGSESGWPVG SETGLEESMQ RFGLWSRELP YPERSGVPDC AFYMRTGSCG  60
YGSKCRYNHP RDRSSVGATV RFGRGEYPER PGELTCQYYS RTGICKFGAS CKFHHPRNGG  120
GSMSNMRVNI YGYPLRPGER ECSYYLKTGQ CKFGVACKFD HPQPGGMSMP EPAHQFYPTV  180
QSSSSVPSFD PYGAASPSYR TGRPPPLPGS YVPGAYGPVL LSPGVVPISG WSPYAGPVSP  240
VLSPSAPHSV GAGSPYGVTQ LPSSASAFVG PYPTFPSPAG PSSSTQERGF PERPGQPDCQ  300
YYLKTGDCKF GSSCRFHHPP DWVVSKTNCL LSSMGLPMRP GVQPCAFYMQ NGHCKFGSTC  360
RFDHPIRTVR YSPSASSLSD MLVAPYLVGS SLATLAPPFS NSEPRPEFIS GPILDPPHSS  420
RTPSSGNTSS SSVGFIYSQT VSASLSDVQQ SSQSSAPLSI STSTRQGVEV RRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-169	C3H family protein