PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028055477.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 192aa    MW: 21405.2 Da    PI: 8.7152
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028055477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.4e-302104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++ +      ++q++++ +v+k+FG++ ++++l+++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_028055477.1   2 SCNGCRVLRKGCNDNCILRQSIqgietSQAQANATVFVAKFFGRAGLMSFLSSIPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e++l++
  XP_028055477.1  97 AVETVLRG 104
                     **998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MSCNGCRVLR KGCNDNCILR QSIQGIETSQ AQANATVFVA KFFGRAGLMS FLSSIPDSQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGRALRPI PEFSGASPAD  120
EFDDASNTNN HNIDFFRSRD LYLARKAKNN NELMITARQH TVGGHSRCWR DTNRDATQWV  180
LSVYSTQWLH LN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-68LBD family protein