PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028055446.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 220aa    MW: 23988.3 Da    PI: 9.1918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028055446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-42421411100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p++fa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+
  XP_028055446.1  42 PCAACKLLRRRCAQECPFSPYFSPHEPQRFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELN 136
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028055446.1 137 AVRAE 141
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MSRERERFDE IGKKIKRESD ASSRMGRRHM LSPPGILNTI TPCAACKLLR RRCAQECPFS  60
PYFSPHEPQR FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA  120
ISALQQQVQS LQAELNAVRA EILRYKYRES TIIPSSHIAL LSSGAAVSIA APPPAPSPSP  180
PLPQPPPSLP PTSSSSSLYT PPSNATDYSA ISNENVSYFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-83LBD family protein