PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055280.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 873aa MW: 97812.4 Da PI: 8.2944

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	789	869	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev +Li++r +++r++ k+++ lWee+s+++ + g+ rsp qCk w +l ++y++ k ek+r +++pyf++++ XP_028055280.1 789 KWKPDEVTKLIKLRGLLHHRFQVVKRRMVLWEEISANLLADGIDRSPGQCKAQWTSLVQKYEESKCDEKSR-----ESWPYFEDMN 869 7******************************************************************96.....67****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MAAFSALSLC PYRFSFRPNP NGYRISCSLA YPSTTGANGR KVPCKKSRRL EGAGKSMEDS 60 VQRKMEQFYE GSDGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGIMF PDYDDLGVQK 120 IIPDTRFIKK WSHKIEAVVI THGHEDHIGA LPWVIRALDS HTPIFASSFT MELIKKRLKE 180 FGIFVPSRLK VFKARRRFNA GPFEIEPIRV THSIPDCCGL VLRCADGTIL HTGDWKIDES 240 PVDGKVFDRE ALEELSKEGV TLMMSDSTNV LSPGRSLSEA VVAEALMRRI LAAKGRVLTT 300 QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA 360 PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDLILY SAKVIPGNET RVMKMLNRIS 420 EIGSTIVMGK NEQLHSSGHG YREELDEVLK IVKPQHFLPI HGELLFLKEH ELLGKSTGIR 480 HTIVIKNGEM LGVSHLRNRR VLSNGFLSLG KENLQLMYSD GDKAFGTSTE LNIEERLRIA 540 LDGIIVVSME ILRPQDADDL TQKTLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV 600 NCPLAHMERT VSEVLRKMVR KYSSKRPEVI AIAIENPSAV LSDELNARLS GKSHVGSGIS 660 DLRKVVDGHT EKRQSTEIEE EEGSSRMHSV NNTQQKLKGH GIEDERLLSE EATTSGFESE 720 ERLSLDPEDS DDFWTKYIVT APIDQLVKDS NGFVPQEEHK QKLEKERKVD DSDEIPTQLK 780 SSKPVKQNKW KPDEVTKLIK LRGLLHHRFQ VVKRRMVLWE EISANLLADG IDRSPGQCKA 840 QWTSLVQKYE ESKCDEKSRE SWPYFEDMNK IFM

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MAAFSALSLC PYRFSFRPNP NGYRISCSLA YPSTTGANGR KVPCKKSRRL EGAGKSMEDS  60
VQRKMEQFYE GSDGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGIMF PDYDDLGVQK  120
IIPDTRFIKK WSHKIEAVVI THGHEDHIGA LPWVIRALDS HTPIFASSFT MELIKKRLKE  180
FGIFVPSRLK VFKARRRFNA GPFEIEPIRV THSIPDCCGL VLRCADGTIL HTGDWKIDES  240
PVDGKVFDRE ALEELSKEGV TLMMSDSTNV LSPGRSLSEA VVAEALMRRI LAAKGRVLTT  300
QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA  360
PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDLILY SAKVIPGNET RVMKMLNRIS  420
EIGSTIVMGK NEQLHSSGHG YREELDEVLK IVKPQHFLPI HGELLFLKEH ELLGKSTGIR  480
HTIVIKNGEM LGVSHLRNRR VLSNGFLSLG KENLQLMYSD GDKAFGTSTE LNIEERLRIA  540
LDGIIVVSME ILRPQDADDL TQKTLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV  600
NCPLAHMERT VSEVLRKMVR KYSSKRPEVI AIAIENPSAV LSDELNARLS GKSHVGSGIS  660
DLRKVVDGHT EKRQSTEIEE EEGSSRMHSV NNTQQKLKGH GIEDERLLSE EATTSGFESE  720
ERLSLDPEDS DDFWTKYIVT APIDQLVKDS NGFVPQEEHK QKLEKERKVD DSDEIPTQLK  780
SSKPVKQNKW KPDEVTKLIK LRGLLHHRFQ VVKRRMVLWE EISANLLADG IDRSPGQCKA  840
QWTSLVQKYE ESKCDEKSRE SWPYFEDMNK IFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein