PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055162.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 437aa MW: 49510.9 Da PI: 7.5717

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.7	5e-26	72	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lW+++s+kmre+gf rs+++C++kw+nl k++kk k+++++ +s +++y+++le XP_028055162.1 72 WVQEETRSLISFRREVDGLFNTSKSNKHLWDQISAKMREKGFDRSATMCTDKWRNLLKEFKKAKHQDRSS---ASAKMSYYKELE 153 ******************************************************************85...56689***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MYLSEKPRPI DFYKGGGERD MVIQVSSNGE LPPHHHHLQQ QQQQQQQQMI LGDSSGGEDH 60 EVKAPKKRAE TWVQEETRSL ISFRREVDGL FNTSKSNKHL WDQISAKMRE KGFDRSATMC 120 TDKWRNLLKE FKKAKHQDRS SASAKMSYYK ELEELLRDRS KNGPYKSPSS SKVDLYIQFS 180 DKGLEDGNIP FGPVEAGGQS TVNLERPLDH DGDPLAITAA DAVAASGVPP WNWRETPVNG 240 GEGHSAYGGR VITVKWGEHI RRIGIDGTAD AIKEAIRSAF RLRTKRAFCL EDEDNVIRSL 300 DRNMPLGNYT LHLDEGISIK VCLYDDSDRM AVRTEDKTLY TEDEFRDFLS RNGFTGLREI 360 NGYRTFDNLD DLRPGGMYQG VCMISVAARK VWEIGRVIPL RTMSCVDKKV AVSNLQELII 420 RSLCSRTVFL ALCSLFV

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MYLSEKPRPI DFYKGGGERD MVIQVSSNGE LPPHHHHLQQ QQQQQQQQMI LGDSSGGEDH  60
EVKAPKKRAE TWVQEETRSL ISFRREVDGL FNTSKSNKHL WDQISAKMRE KGFDRSATMC  120
TDKWRNLLKE FKKAKHQDRS SASAKMSYYK ELEELLRDRS KNGPYKSPSS SKVDLYIQFS  180
DKGLEDGNIP FGPVEAGGQS TVNLERPLDH DGDPLAITAA DAVAASGVPP WNWRETPVNG  240
GEGHSAYGGR VITVKWGEHI RRIGIDGTAD AIKEAIRSAF RLRTKRAFCL EDEDNVIRSL  300
DRNMPLGNYT LHLDEGISIK VCLYDDSDRM AVRTEDKTLY TEDEFRDFLS RNGFTGLREI  360
NGYRTFDNLD DLRPGGMYQG VCMISVAARK VWEIGRVIPL RTMSCVDKKV AVSNLQELII  420
RSLCSRTVFL ALCSLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-168	Trihelix family protein