PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028054999.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 307aa MW: 35116.9 Da PI: 9.9267

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028054999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	114	169	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++f++eq++ Le++Fe++ ++ +++ +LA++lgL+ rq+ +WFqNrRa++k XP_028054999.1 114 KKNKRRFSEEQIRSLESMFESETKLEPRKKVQLARELGLQPRQIAIWFQNRRARWK 169 68899**************************************************9 PP
2	HD-ZIP_I/II	123	1.4e-39	116	207	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE++Fe+e+kLep++Kv+lareLglqprq+a+WFqnrRAR+k+kq+E++y++Lk++yd+l ++ e+L+ke+++L ++lk XP_028054999.1 116 NKRRFSEEQIRSLESMFESETKLEPRKKVQLARELGLQPRQIAIWFQNRRARWKSKQIEQNYRVLKANYDSLLSRFESLKKEKQSLLKQLKM 207 79*************************************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MEEKMPREIK AHWLELTHQP KATVTCMLDT FYMALTINVI KPNLISNVLK SNHLRIFRRR 60 KEEKKTIRKT TYKLEFNKIM EGEEYSASPP PPPAATKIES LACPEVLQNP RKKKKNKRRF 120 SEEQIRSLES MFESETKLEP RKKVQLAREL GLQPRQIAIW FQNRRARWKS KQIEQNYRVL 180 KANYDSLLSR FESLKKEKQS LLKQLKMLGD LLEKTHDQGS KSKDLGGNST SGDSDSGEPS 240 CLKKGSDRGA VADSDGDEGG SGKNIQQEAT ENMGGQVDGS LALPEKSCNF ESSSLFDGNS 300 TWWDFWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	117	PRKKKKNK
2	164	172	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	8e-35	HD-ZIP family protein