PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028054459.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 634aa MW: 70455.9 Da PI: 5.5005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028054459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.2	1.3e-29	60	144	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+++ gf+rs+k+Ckek+en+ k++k++keg++ +++ +t+++fdqlea XP_028054459.1 60 RWPRQETLALLKIRSDMDVAFRDSSLKGPLWEQVSRKLADLGFHRSAKKCKEKFENVYKYHKRTKEGRST--KPDGKTYRFFDQLEA 144 8*****************************************************************97..577889*****85 PP
2	trihelix	103.2	1.9e-32	453	538	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi +r++++ +++++ k+plWee+s++m + g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_028054459.1 453 RWPKAEVEALISLRTNLDLKYQENGPKGPLWEEISNAMCKIGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 538 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MLGVSGILGN SGGDAPQPHE SSAATTSGGE VGVAGSSTAG LSEEEKLRIE EGDRNSGGNR 60 WPRQETLALL KIRSDMDVAF RDSSLKGPLW EQVSRKLADL GFHRSAKKCK EKFENVYKYH 120 KRTKEGRSTK PDGKTYRFFD QLEALESQPP LSLLPPPPRS QTHQAAQSPN PVAVAMPMSM 180 AMPASANLPI VSQVTVPSTA NPISVSLNIN PTNPFPSNPF PPPPPPQPVP ATTTTIPNPI 240 NLSQSTPIPS SHPNMSSSFA SISSSSSTSS DEEPERRGKR KRKWESFFQR LMQEVIEKQE 300 EMQKQFLETL ESRERDRLAR EEAWKVQEMA RMNREHDLLV QERSIAAAKE AAVIAFLQKV 360 SEQQIPNVPQ IQMQMQVHTQ ENPIPPPAAA VQQPPPQPQP QQPAAVQPPP PIVQPTPQPP 420 LQLQPPIQSS AKSLVNPKTD NGGENLASPS SSRWPKAEVE ALISLRTNLD LKYQENGPKG 480 PLWEEISNAM CKIGYNRNPK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY 540 KEKAKIDNST NCFNPGGGFA GIKPENPMVP IMVQPEQQWP LQQEQQHRPE EDRDSENIDQ 600 NNDDDDDGDE DDDEDEASGY EIVTNKPSSV GMVE

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MLGVSGILGN SGGDAPQPHE SSAATTSGGE VGVAGSSTAG LSEEEKLRIE EGDRNSGGNR  60
WPRQETLALL KIRSDMDVAF RDSSLKGPLW EQVSRKLADL GFHRSAKKCK EKFENVYKYH  120
KRTKEGRSTK PDGKTYRFFD QLEALESQPP LSLLPPPPRS QTHQAAQSPN PVAVAMPMSM  180
AMPASANLPI VSQVTVPSTA NPISVSLNIN PTNPFPSNPF PPPPPPQPVP ATTTTIPNPI  240
NLSQSTPIPS SHPNMSSSFA SISSSSSTSS DEEPERRGKR KRKWESFFQR LMQEVIEKQE  300
EMQKQFLETL ESRERDRLAR EEAWKVQEMA RMNREHDLLV QERSIAAAKE AAVIAFLQKV  360
SEQQIPNVPQ IQMQMQVHTQ ENPIPPPAAA VQQPPPQPQP QQPAAVQPPP PIVQPTPQPP  420
LQLQPPIQSS AKSLVNPKTD NGGENLASPS SSRWPKAEVE ALISLRTNLD LKYQENGPKG  480
PLWEEISNAM CKIGYNRNPK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY  540
KEKAKIDNST NCFNPGGGFA GIKPENPMVP IMVQPEQQWP LQQEQQHRPE EDRDSENIDQ  600
NNDDDDDGDE DDDEDEASGY EIVTNKPSSV GMVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-57	Trihelix family protein