PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028054458.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1019aa MW: 112935 Da PI: 5.617

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028054458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	161	238	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C dls+ak+yhrrhkvCe+hska+ +lv + qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+q+ XP_028054458.1 161 VCQVEDCGIDLSNAKDYHRRHKVCEMHSKASRALVGSVLQRFCQQCSRFHVLKEFDDGKRSCRRRLAGHNRRRRKTQP 238 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence
MEKRVGGEAN LLYGLGSADL RAVGKRSLEW DPNDWRWDGD LFIASPLNSN HSSNYQSRQL 60 FPLVSGIPAV GVSSNSSSSC SDEVVNPVTV QAKGDLEKRR RVIVVEDENL DDEARNLTLK 120 IGGGHAYPMT ETEREAGNWD GTSGNGNKSK LPGAPITNRA VCQVEDCGID LSNAKDYHRR 180 HKVCEMHSKA SRALVGSVLQ RFCQQCSRFH VLKEFDDGKR SCRRRLAGHN RRRRKTQPDA 240 VVNSSSFNDD QASSYLLINL LRILSNMHSN KSNQPSDQDL LSHILRSLAS HGGLHGDKNI 300 SGLLQESQNL LNSGNSEMVS ALLSNSSQGA PRPIQQNLPV TTSEVPQRGF CVKDARDQDV 360 QTAHFENLTT LFSIKDSPPA YSEARDSSAG RSRLNNFDLN DVYVDSDECT EDLERSPVAL 420 DLRTASLECP SWVQQDSHQS SPPQTSGNSD SASAQSPSSF SGESQSRTDR IVLKLFGKEP 480 SDFPYALRAQ ILNWLSHSPT DIESYIRPGC IVLTIYLCLP DSAWEELCCD LTSSLSRLLD 540 ASNDDTFWTT GWVYIRVQHQ VAFMYNGQVV AETSLPLKND NCSAILSVKP IAVSISERAQ 600 FLVKGFNLKQ PSTRLLCALE GNYLVEEATD ELVEDVDILN FSCSIPAVTG RGFIEVEDHG 660 LSSSFFPFIV AEKDVCSEIC TLENAIDLTE TDDIQGENAK MEARTQAMDF VHEMGWLLHR 720 SRLKSRLGHF DPNSELFPLG RFKWLMEFSM DHDWCAVVKK LLDILLDGTA GTGVGEHPFL 780 KPTLSEMGLI HRAVRRNSRP LVECLLRYVP EKVSDELRSE LSHLVGGDEN LFRPDVVGPS 840 GLTPLHVAAG IDGSEDVLDA LTDDPGKVGV EAWKSARDST GFTPEDYARL RGHYSYIHLV 900 QKKINRRAVT GHVVVDIPGY LSDCNIINQK QNEQQVASFE IGSSEIRRCI KQSCRLCDLK 960 KLSYGNNANS SSLLYRPAML SMVAIAAVCV CVALLFKSCP EVLFVFRPFR WELLDYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence

MEKRVGGEAN LLYGLGSADL RAVGKRSLEW DPNDWRWDGD LFIASPLNSN HSSNYQSRQL  60
FPLVSGIPAV GVSSNSSSSC SDEVVNPVTV QAKGDLEKRR RVIVVEDENL DDEARNLTLK  120
IGGGHAYPMT ETEREAGNWD GTSGNGNKSK LPGAPITNRA VCQVEDCGID LSNAKDYHRR  180
HKVCEMHSKA SRALVGSVLQ RFCQQCSRFH VLKEFDDGKR SCRRRLAGHN RRRRKTQPDA  240
VVNSSSFNDD QASSYLLINL LRILSNMHSN KSNQPSDQDL LSHILRSLAS HGGLHGDKNI  300
SGLLQESQNL LNSGNSEMVS ALLSNSSQGA PRPIQQNLPV TTSEVPQRGF CVKDARDQDV  360
QTAHFENLTT LFSIKDSPPA YSEARDSSAG RSRLNNFDLN DVYVDSDECT EDLERSPVAL  420
DLRTASLECP SWVQQDSHQS SPPQTSGNSD SASAQSPSSF SGESQSRTDR IVLKLFGKEP  480
SDFPYALRAQ ILNWLSHSPT DIESYIRPGC IVLTIYLCLP DSAWEELCCD LTSSLSRLLD  540
ASNDDTFWTT GWVYIRVQHQ VAFMYNGQVV AETSLPLKND NCSAILSVKP IAVSISERAQ  600
FLVKGFNLKQ PSTRLLCALE GNYLVEEATD ELVEDVDILN FSCSIPAVTG RGFIEVEDHG  660
LSSSFFPFIV AEKDVCSEIC TLENAIDLTE TDDIQGENAK MEARTQAMDF VHEMGWLLHR  720
SRLKSRLGHF DPNSELFPLG RFKWLMEFSM DHDWCAVVKK LLDILLDGTA GTGVGEHPFL  780
KPTLSEMGLI HRAVRRNSRP LVECLLRYVP EKVSDELRSE LSHLVGGDEN LFRPDVVGPS  840
GLTPLHVAAG IDGSEDVLDA LTDDPGKVGV EAWKSARDST GFTPEDYARL RGHYSYIHLV  900
QKKINRRAVT GHVVVDIPGY LSDCNIINQK QNEQQVASFE IGSSEIRRCI KQSCRLCDLK  960
KLSYGNNANS SSLLYRPAML SMVAIAAVCV CVALLFKSCP EVLFVFRPFR WELLDYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein