PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028054417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25756.7 Da PI: 7.4372 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.5e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv+apyfpae+p+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql ql+ +l XP_028054417.1 14 PCAACKFLRRKCLPECVFAPYFPAEHPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLLQLQIDLT 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_028054417.1 109 CAKSE 113 99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MAMTSSSSSS NLPPCAACKF LRRKCLPECV FAPYFPAEHP QKFANVHKVF GASNVTKLLN 60 ELQPHQREDA VNSLAYEADM RLRDPVYGCV GVISLLQHQL LQLQIDLTCA KSELSKYHHH 120 QNLGFTGGGG SSGDGDGGGS GGSLDHHHYH HHQFFPRSNN QQQHQEQVMR TRFDVGNNNV 180 VYEYDVNSLF AMNVSPTASI GGQLNHQFQQ QPRATVRAAT ASEDDWRKAI GPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 4e-61 | LBD family protein |