PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028054275.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 337aa    MW: 39033.2 Da    PI: 6.9545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028054275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-24953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk
  XP_028054275.1  9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGK 53
                    689*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGKATLFRGE  60
RSNIEEVITK FAQLTPQERT KRKLESLEAL KKTFRKLDHD VNIHDFLGSS TQSIEELSNQ  120
LRMMQAQLTD AHKRLSCWSN PDKIDNIEHL SQMEESLRES LNQIRMQKHP FMSLECTNQF  180
QNGMHLPLMM GGMQDAQPLS WFTNNENQHM ILTGEPNYLP QSFFSPRKTE IENTRQVDVT  240
GQEGGALNEL DYAACLRLQL REQYPCQPYS SLDLHDAKNL KPETEMNLQG DALDYQINSS  300
FQLPRTIYDN MHHTWAPPSE HSTISMFNEN SYSQQPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-106M-type_MADS family protein