PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028054273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 341aa MW: 39430.6 Da PI: 6.9073 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk XP_028054273.1 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGK 53 689*****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGKATLFRGE 60 RSNIEEVITK FAQLTPQERT KRKLESLEAL KKTFRKLDHD VNIHDFLGSS TQSIEELSNQ 120 LRMMQAQLTD AHKRLSCWSN PDKIDNIEHL SQMEESLRES LNQIRMQKFQ NGMHLPLMMG 180 GMQDAQPLSW FTNNENQHMI LTGEPNYLPQ RDIECSNNPS FSTFSSFFSP RKTEIENTRQ 240 VDVTGQEGGA LNELDYAACL RLQLREQYPC QPYSSLDLHD AKNLKPETEM NLQGDALDYQ 300 INSSFQLPRT IYDNMHHTWA PPSEHSTISM FNENSYSQQP H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-103 | M-type_MADS family protein |