PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028054272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 351aa MW: 40604.9 Da PI: 6.7913 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk XP_028054272.1 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGK 53 689*****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGKATLFRGE 60 RSIEEVITKF AQLTPQERTK RKLESLEALK KTFRKLDHDV NIHDFLGSST QSIEELSNQL 120 RMMQAQLTDA HKRLSCWSNP DKIDNIEHLS QMEESLRESL NQIRMQKHPF MSLECTNQFQ 180 NGMHLPLMMG GMQDAQPLSW FTNNENQHMI LTGEPNYLPQ RDIECSNNPS FSTFSSFFSP 240 RKTEIENTRQ VDVTGQEGGA LNELDYAACL RLQLREQYPC QPYSSLDLHD AKNLKPETEM 300 NLQGDALDYQ INSSFQLPRT IYDNMHHTWA PPSEHSTISM FNENSYSQQP H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-105 | M-type_MADS family protein |