PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028053779.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 205aa    MW: 22604.7 Da    PI: 5.9821
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028053779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.12.6e-42401391100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+  l+a+la
  XP_028053779.1  40 PCAACKILRRRCAEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICHLQKQVGDLQAQLA 134
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028053779.1 135 KAQAE 139
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
METSDTTTTT ISSSSPPHSL SPSSSSSPPP PPSHQVVVSP CAACKILRRR CAEKCVLAPY  60
FPPTDPLKFT TAHRVFGASN IIKFLQELPE SQRADAVSSM VYEANARLRD PVYGCAGAIC  120
HLQKQVGDLQ AQLAKAQAEL INMQCQQENL VTFICMEMGQ SPQAAPPQQQ QQSFDNFMIN  180
NPQMISFHVN NPTLLDENMW EPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-63LBD family protein